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Influenza A/H3N2
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GSD_00FZFUG.1
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USA/GSD_00FZFUG.1/2026-04-07
W. H. Clore &
P. C. Gauger
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Submission details
Submission ID
PZ332801.1.seg4/PZ332802.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-02 04:42:08 UTC
Date released
2026-05-02 04:42:54 UTC
Clade
Clade HA
B.1
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
South_Dakota
Collection date
2026-04-07
Isolate name
A/swine/South_Dakota/A02758988/2026
Host
Host
Sus scrofa
INSDC
INSDC accession seg4
PZ332801.1
INSDC accession seg6
PZ332802.1
NCBI release date
2026-04-27
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg4
1701 (97.9%)
Total SNPs seg4
118
Length seg6
1410 (98%)
Total SNPs seg6
86
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
T
46
G
T
53
C
G
56
A
G
57
A
C
72
A
C
77
T
C
89
T
A
90
G
G
95
A
C
116
T
C
152
T
G
155
A
A
156
G
A
163
G
T
173
C
C
189
T
G
199
A
C
208
T
Show more
seg6
G
34
A
A
55
C
C
61
T
A
62
G
T
96
C
T
100
C
A
147
G
T
148
C
T
162
A
T
166
C
C
220
A
C
223
T
T
237
C
C
244
T
C
248
T
A
280
G
T
298
C
T
304
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
L
3
I
HA1:
S
9
G
HA1:
N
31
D
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
E
HA1:
D
53
N
HA1:
I
58
V
HA1:
E
62
G
HA1:
I
67
V
HA1:
G
78
D
HA1:
K
83
Q
HA1:
K
92
R
HA1:
A
106
V
HA1:
N
121
E
HA1:
D
122
N
HA1:
T
131
N
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HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
I
149
M
HA2:
G
150
E
HA2:
S
151
T
HA2:
D
160
N
NA
NA:
T
19
A
NA:
I
30
T
NA:
N
47
S
NA:
L
52
Q
NA:
I
77
T
NA:
P
81
S
NA:
L
126
P
NA:
D
127
E
NA:
V
149
A
NA:
R
150
H
NA:
K
199
N
NA:
N
220
K
NA:
D
221
N
NA:
T
238
A
NA:
N
245
S
NA:
T
247
A
NA:
I
303
V
NA:
K
308
E
Show more
SigPep
SigPep:
I
10
S
SigPep:
V
14
I
Deletions
N/A
Insertions
N/A
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