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GSD_00FZFXA.1
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USA/GSD_00FZFXA.1/2026-04-08
W. H. Clore &
P. C. Gauger
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Submission details
Submission ID
PZ332813.1.seg4/PZ332814.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-02 04:42:08 UTC
Date released
2026-05-02 04:42:54 UTC
Clade
Clade HA
unassigned
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Iowa
Collection date
2026-04-08
Isolate name
A/swine/Iowa/A02759052/2026
Host
Host
Sus scrofa
INSDC
INSDC accession seg4
PZ332813.1
INSDC accession seg6
PZ332814.1
NCBI release date
2026-04-27
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg4
1701 (97.9%)
Total SNPs seg4
142
Length seg6
1410 (98%)
Total SNPs seg6
128
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
A
21
G
G
23
A
C
25
T
T
26
C
C
34
T
T
42
C
C
44
A
G
52
A
T
60
C
C
62
A
A
80
T
G
91
A
C
94
T
G
113
A
A
125
G
A
140
G
A
156
G
T
185
C
Show more
seg6
G
25
A
G
34
A
A
55
T
T
59
G
A
67
G
T
74
C
C
76
T
A
95
G
A
97
G
T
100
C
T
125
C
A
130
C
T
132
G
A
134
G
C
136
T
C
138
T
C
142
T
C
143
A
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
S
9
N
HA1:
T
10
M
HA1:
I
25
M
HA1:
N
31
D
HA1:
S
45
N
HA1:
S
46
F
HA1:
G
50
E
HA1:
D
53
N
HA1:
H
56
Y
HA1:
E
62
G
HA1:
K
82
N
HA1:
Y
94
H
HA1:
N
96
D
HA1:
D
122
K
HA1:
N
133
D
HA1:
T
135
A
HA1:
N
144
S
HA1:
K
158
N
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
L
102
M
HA2:
L
110
M
HA2:
R
121
K
HA2:
D
164
N
HA2:
E
177
D
HA2:
G
181
E
HA2:
L
202
S
HA2:
R
216
K
NA
NA:
S
18
A
NA:
I
20
M
NA:
F
23
L
NA:
I
30
V
NA:
Y
40
H
NA:
E
41
D
NA:
F
42
C
NA:
N
43
D
NA:
S
44
F
NA:
P
46
T
NA:
I
77
L
NA:
P
81
L
NA:
G
93
K
NA:
L
126
P
NA:
V
143
R
NA:
N
147
D
NA:
R
150
H
NA:
Y
155
H
Show more
SigPep
SigPep:
K
2
E
SigPep:
T
3
I
SigPep:
A
6
V
SigPep:
Y
9
Q
SigPep:
C
12
Y
SigPep:
F
15
L
Deletions
N/A
Insertions
N/A
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