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Influenza A/H1N1pdm
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GSD_00G01TW.1
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USA/GSD_00G01TW.1/2026-04-02
A. Hassan &
B. Cherrelle
New Jersey Department of Health-Influenza Surveillance, Public Health & Environmental Laboratories (PHEL), Bioinformatics Program
Submission details
Submission ID
PZ348013.1.seg2/PZ348014.1.seg4/PZ348015.1.seg5/PZ348016.1.seg6/PZ348017.1.seg7/PZ348018.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-03 06:49:01 UTC
Date released
2026-05-03 06:49:58 UTC
Clade
Clade HA
D.3.1
Clade NA
D.1
Sample details
Collection country
USA
Collection subdivision level 1
New Jersey
Collection date
2026-04-02
Isolate name
A/New Jersey/V26004146/2026
Host
Host
Homo sapiens
INSDC
INSDC accession seg2
PZ348013.1
INSDC accession seg4
PZ348014.1
INSDC accession seg5
PZ348015.1
INSDC accession seg6
PZ348016.1
INSDC accession seg7
PZ348017.1
INSDC accession seg8
PZ348018.1
NCBI release date
2026-04-30
INSDC seg4
subtype_seg4
H1
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg2
2274 (100%)
Total SNPs seg2
76
Length seg4
1701 (97.1%)
Total SNPs seg4
110
Length seg5
1497 (100%)
Total SNPs seg5
58
Length seg6
1410 (98.4%)
Total SNPs seg6
25
Length seg7
982 (100%)
Total SNPs seg7
27
Length seg8
838 (97.1%)
Total SNPs seg8
33
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg2
C
27
T
G
42
A
A
63
G
T
81
C
A
159
G
G
168
A
G
180
A
C
192
A
G
204
A
T
207
A
T
210
C
T
222
C
G
225
A
C
297
T
G
312
A
A
345
G
A
366
G
T
384
C
Show more
seg4
A
38
G
C
42
A
A
47
G
G
57
A
A
119
G
T
161
C
C
164
T
G
188
A
C
222
T
A
231
C
C
281
A
C
293
G
C
318
T
G
322
A
G
360
A
G
409
A
G
416
A
A
429
G
Show more
seg5
G
42
T
C
87
T
A
97
G
C
132
T
C
141
A
C
171
T
T
177
C
C
180
T
C
249
A
A
286
G
A
288
C
G
298
A
G
309
A
T
314
C
G
315
A
R
341
A
T
365
A
A
390
G
Show more
seg6
C
20
T
G
238
A
C
285
T
C
301
T
C
452
A
C
571
T
T
575
C
G
607
A
A
785
G
G
788
A
T
799
C
A
818
G
G
867
A
C
874
T
C
893
T
G
914
T
A
1049
G
C
1187
T
Show more
seg7
C
42
A
G
75
A
C
124
A
G
238
A
G
258
A
A
293
G
G
306
A
G
339
A
G
342
A
C
375
A
C
390
T
G
402
A
T
432
C
G
441
T
G
492
A
C
507
A
A
574
G
C
622
A
Show more
seg8
C
6
A
C
42
T
C
54
T
G
60
A
T
99
C
C
108
A
T
159
C
G
163
A
C
192
T
C
204
T
A
238
G
G
250
A
C
264
T
C
268
A
C
315
T
A
367
G
A
375
T
A
391
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
H
51
Y
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
R
113
K
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
A
139
D
HA1:
K
142
R
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
D
21
G
M2:
S
23
N
NA
NA:
R
77
K
NA:
P
93
S
NA:
A
98
V
NA:
T
188
I
NA:
S
200
N
NA:
I
264
T
NA:
E
287
K
NA:
T
289
I
NA:
I
396
M
NA:
V
453
M
NA:
K
469
N
NEP
NEP:
D
2
E
NEP:
N
29
S
NEP:
T
48
A
NEP:
M
83
I
NP
NP:
E
14
D
NP:
I
33
V
NP:
I
96
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
V
425
I
NP:
S
498
N
NS1
NS1:
D
2
E
NS1:
E
55
K
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
K
131
E
NS1:
A
155
T
NS1:
N
205
S
PB1
PB1:
G
154
D
PB1:
V
200
I
PB1:
K
386
R
PB1:
I
397
M
PB1:
I
435
T
PB1:
S
654
I
PB1:
K
757
R
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
N/A
Insertions
N/A
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