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Influenza A/H1N1pdm
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GSD_00H8LQ0.1
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USA/GSD_00H8LQ0.1/2026-09-14
E. B. Fox,
J. M. Garrigues &
N. M. Green
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Submission details
Submission ID
QB237457.1.seg1/QB237458.1.seg2/QB237459.1.seg3/QB237460.1.seg4/QB237461.1.seg5/QB237462.1.seg6/QB237463.1.seg7/QB237464.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-28 03:49:36 UTC
Date released
2026-10-28 03:49:52 UTC
INSDC
bioprojectAccession
PRJNA967387
biosampleAccession
SAMN64447847
INSDC accession seg1
QB237457.1
INSDC accession seg2
QB237458.1
INSDC accession seg3
QB237459.1
INSDC accession seg4
QB237460.1
INSDC accession seg5
QB237461.1
INSDC accession seg6
QB237462.1
INSDC accession seg7
QB237463.1
INSDC accession seg8
QB237464.1
NCBI release date
2026-10-27
SRA run accession
SRR41372196
Clade
Clade HA
D.3.1
Clade NA
D.1
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2026-09-14
Isolate name
A/California/LACPHL-INF02853/2026
Host
Host
Homo sapiens
INSDC seg4
subtype_seg4
H1
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg1
2215 (97.1%)
Total SNPs seg1
92
Length seg2
2190 (93.4%)
Total SNPs seg2
74
Total unknown nucs seg2
66
Length seg3
2085 (96.9%)
Total SNPs seg3
88
Length seg4
1671 (94.8%)
Total SNPs seg4
117
Total unknown nucs seg4
10
Length seg5
1455 (97.2%)
Total SNPs seg5
63
Length seg6
1255 (87.6%)
Total SNPs seg6
26
Length seg7
979 (99.7%)
Total SNPs seg7
31
Length seg8
714 (82.7%)
Total SNPs seg8
28
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg1
G
66
A
A
90
C
A
96
G
A
108
G
A
132
G
A
138
G
G
161
A
A
174
G
T
201
C
G
207
A
A
225
G
A
226
T
C
242
T
A
243
G
C
261
T
C
285
A
A
291
G
C
309
T
Show more
seg2
A
159
G
G
168
A
G
180
A
T
183
C
C
192
T
C
201
T
T
207
A
T
210
C
T
222
C
G
225
A
C
297
T
G
312
A
T
324
A
G
354
A
A
366
G
A
510
G
G
531
A
A
537
G
Show more
seg3
T
81
C
G
84
C
A
88
G
C
90
T
C
99
T
T
108
A
A
114
T
C
153
T
C
162
T
C
165
T
G
187
A
G
204
A
G
298
A
G
423
A
G
477
A
G
498
A
G
504
A
G
597
A
Show more
seg4
A
38
G
C
42
A
A
47
G
G
57
A
A
119
G
T
161
C
C
164
T
G
188
A
A
231
C
A
233
T
C
281
A
C
293
G
C
318
T
G
322
A
G
360
A
G
409
A
G
416
A
A
429
G
Show more
seg5
G
42
T
C
57
T
C
87
T
A
97
G
C
141
A
C
171
T
T
177
C
C
180
T
C
249
A
A
288
C
G
298
A
C
303
T
G
309
A
T
314
C
G
315
A
R
341
A
T
365
A
A
390
G
Show more
seg6
A
225
C
C
301
T
T
347
C
C
401
T
C
452
A
C
572
A
G
607
A
G
754
A
A
785
G
G
788
A
T
799
C
A
818
G
G
881
T
C
893
T
G
914
T
A
1049
G
A
1177
G
C
1187
T
Show more
seg7
G
48
A
G
75
A
T
123
C
C
124
A
G
238
A
G
258
A
A
293
G
G
306
A
G
339
A
G
342
A
C
375
A
T
432
C
G
441
T
G
492
A
C
507
A
A
574
G
C
622
A
G
660
A
Show more
seg8
T
99
C
C
108
A
T
159
C
G
163
A
C
192
T
C
204
T
A
238
G
G
250
A
C
264
T
C
268
A
C
315
T
A
367
G
A
375
T
A
391
G
G
396
A
T
414
C
G
463
A
A
558
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
H
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
R
113
K
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
A
139
N
HA1:
K
142
R
HA1:
G
155
E
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
R
18
K
M2:
D
21
G
M2:
S
23
N
M2:
I
28
T
M2:
Q
78
R
NA
NA:
N
73
H
NA:
A
98
V
NA:
S
200
N
NA:
G
249
E
NA:
I
264
T
NA:
K
390
R
NA:
V
453
M
NA:
K
469
N
NEP
NEP:
N
29
S
NEP:
T
48
A
NEP:
M
83
I
NP
NP:
E
14
D
NP:
I
33
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
V
425
I
NS1
NS1:
E
55
K
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
K
131
E
NS1:
A
155
T
NS1:
N
205
S
PA
PA:
I
30
V
PA:
V
63
I
PA:
V
100
I
PA:
P
224
S
PA:
S
225
C
PA:
R
262
K
PA:
N
321
K
PA:
I
330
V
PA:
A
337
T
PA:
K
339
N
PA:
R
362
K
PA:
D
396
N
PA:
I
438
V
PA:
I
459
M
PA:
I
505
V
PA:
D
547
E
PA:
R
626
K
PA-X
PA-X:
I
30
V
PA-X:
V
63
I
PA-X:
V
100
I
PA-X:
R
199
K
PA-X:
N
204
S
PA-X:
R
206
K
PA-X:
R
221
Q
PA-X:
L
229
S
PB1
PB1:
I
179
M
PB1:
V
200
I
PB1:
K
386
R
PB1:
I
397
M
PB1:
I
435
T
PB1:
P
454
S
PB1:
D
729
E
PB2
PB2:
R
54
K
PB2:
T
76
S
PB2:
T
81
M
PB2:
K
187
R
PB2:
D
195
N
PB2:
G
225
S
PB2:
A
274
T
PB2:
R
293
K
PB2:
R
299
K
PB2:
V
344
M
PB2:
I
354
L
PB2:
S
453
T
PB2:
L
475
M
PB2:
I
559
M
PB2:
V
667
I
PB2:
V
731
I
PB2:
I
758
T
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
N/A
Insertions
N/A
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