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Influenza A/H5N1
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GSD_00H91X3.1
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USA/GSD_00H91X3.1/2026-10-29
P. Roychoudhury,
B. E. Nunley &
A. L. Greninger
University of Washington Virology Lab, Laboratory Medicine and Pathology
Submission details
Submission ID
QB266821.1.seg1/QB266820.1.seg2/QB266827.1.seg3/QB266822.1.seg4/QB266824.1.seg5/QB266823.1.seg6/QB266826.1.seg7/QB266825.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-11-02 03:49:30 UTC
Date released
2026-11-02 03:49:46 UTC
Clade
clade
2.3.4.4b
Sample details
Collection country
USA
Collection subdivision level 1
Washington
Collection date
2026-10-29
Isolate name
A/Washington/WA-UW-110701/2026
Host
Host
Homo sapiens
INSDC
INSDC accession seg1
QB266821.1
INSDC accession seg2
QB266820.1
INSDC accession seg3
QB266827.1
INSDC accession seg4
QB266822.1
INSDC accession seg5
QB266824.1
INSDC accession seg6
QB266823.1
INSDC accession seg7
QB266826.1
INSDC accession seg8
QB266825.1
NCBI release date
2026-11-01
INSDC seg4
subtype_seg4
H5
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg1
2280 (97.4%)
Total SNPs seg1
361
Length seg2
2316 (98.9%)
Total SNPs seg2
273
Length seg3
2208 (98.9%)
Total SNPs seg3
177
Length seg4
1704 (97%)
Total deleted nucs seg4
3
Total SNPs seg4
191
Length seg5
1541 (98.4%)
Total inserted nucs seg5
1
Total SNPs seg5
187
Length seg6
1433 (98.3%)
Total SNPs seg6
155
Length seg7
1002 (97.6%)
Total SNPs seg7
64
Length seg8
865 (100%)
Frame shifts seg8
NS1:23-26(nt:80-92),NS1:70-75(nt:222-238)
Total deleted nucs seg8
9
Total frame shifts seg8
2
Total inserted nucs seg8
9
Total SNPs seg8
227
Nucleotide mutations
Mutations called relative to the
NC_007357.1
,
NC_007358.1
,
NC_007359.1
,
NC_007362.1
,
NC_007360.1
,
NC_007361.1
,
NC_007363.1
&
NC_007364.1
references
Substitutions
seg1
A
33
G
A
48
G
G
63
A
C
69
T
A
90
C
G
102
C
T
105
C
T
108
C
A
126
G
G
147
A
T
159
A
A
199
G
A
211
C
G
222
A
T
228
C
G
243
A
G
255
C
T
258
C
Show more
seg2
T
42
C
T
48
C
A
54
G
G
60
T
T
75
C
T
81
C
T
93
G
C
138
T
C
153
T
G
180
A
G
195
A
A
199
T
G
204
A
T
207
C
A
210
G
C
216
T
G
228
A
C
241
T
Show more
seg3
C
20
T
G
81
A
A
117
G
G
120
A
G
144
A
G
154
A
A
171
G
C
180
T
T
189
C
G
195
A
C
206
T
A
207
G
A
211
G
C
228
A
G
249
A
A
255
G
G
270
A
A
276
G
Show more
seg4
A
30
C
G
36
A
T
39
A
C
54
T
T
57
C
C
63
T
C
90
T
C
102
T
G
114
A
T
141
C
T
183
C
C
192
A
T
198
C
A
207
G
T
216
A
C
219
G
T
223
C
G
225
A
Show more
seg5
A
40
C
G
57
A
T
72
C
G
81
A
A
96
G
T
111
C
G
117
A
G
124
A
T
147
C
T
153
C
G
159
A
T
162
C
T
165
C
A
183
G
C
195
T
C
198
T
T
199
C
T
201
C
Show more
seg6
A
15
T
T
17
C
G
35
A
T
43
C
G
69
A
A
78
G
T
80
C
T
90
C
A
92
G
C
122
T
T
125
C
T
134
C
G
137
A
C
150
T
A
154
G
A
155
G
G
156
C
T
179
C
Show more
seg7
A
25
G
A
76
G
G
94
A
G
112
A
A
127
G
C
142
T
A
196
G
A
205
G
G
268
A
T
275
C
A
279
G
A
285
C
T
292
C
T
301
C
T
307
C
G
310
A
T
316
C
C
320
T
Show more
seg8
G
9
A
A
30
T
C
34
G
T
50
C
T
53
C
A
55
T
A
59
T
C
65
T
A
66
G
A
68
C
A
69
C
A
71
C
G
74
A
T
76
G
C
78
T
T
83
A
A
84
C
T
85
C
Show more
Deletions
seg4
1054-1056
seg8
36-38, 90, 93, 239-242
Insertions
seg5
ins_1549:A
seg8
ins_28:TGT, ins_79:TG, ins_221:GCGG
Amino acid substitutions
Substitutions called relative to the
NC_007357.1
,
NC_007358.1
,
NC_007359.1
,
NC_007362.1
,
NC_007360.1
,
NC_007361.1
,
NC_007363.1
&
NC_007364.1
references
Substitutions
HA
HA:
K
3
N
HA:
R
69
K
HA:
N
88
R
HA:
K
98
R
HA:
S
100
N
HA:
D
104
G
HA:
D
110
S
HA:
F
111
L
HA:
L
120
M
HA:
T
124
I
HA:
S
139
P
HA:
D
142
E
HA:
A
143
T
HA:
S
145
L
HA:
V
147
M
HA:
S
149
A
HA:
H
154
Q
HA:
R
156
A
Show more
M1
M1:
N
85
S
M1:
N
87
T
M1:
K
101
R
M1:
V
115
I
M1:
T
140
A
M1:
F
144
L
M1:
M
165
I
M1:
A
200
V
M1:
A
227
T
M1:
K
230
R
M1:
N
232
D
M1:
M
248
L
M2
M2:
E
14
G
M2:
K
18
N
M2:
V
28
I
M2:
R
61
G
M2:
D
88
N
NA
NA:
I
8
T
NA:
V
17
I
NA:
I
20
V
NA:
H
44
Y
NA:
Q
45
R
NA:
A
46
P
NA:
V
67
I
NA:
N
71
S
NA:
T
72
A
NA:
T
76
A
NA:
K
78
Q
NA:
A
81
T
NA:
V
99
I
NA:
H
100
Y
NA:
K
111
R
NA:
H
155
Y
NA:
T
188
I
NA:
M
258
I
Show more
NP
NP:
A
27
T
NP:
Y
52
H
NP:
V
105
M
NP:
I
119
V
NP:
M
136
L
NP:
A
353
V
NP:
S
450
N
NP:
S
451
A
NP:
S
482
N
NS1
NS1:
I
6
V
NS1:
T
7
L
NS1:
Y
14
F
NS1:
I
18
V
NS1:
L
21
R
NS1:
L
22
F
NS1:
C
28
G
NS1:
D
33
L
NS1:
A
42
S
NS1:
K
44
R
NS1:
R
55
E
NS1:
V
56
T
NS1:
M
59
R
NS1:
E
60
T
NS1:
K
63
Q
NS1:
D
67
G
NS1:
I
79
M
NS1:
A
80
T
Show more
NS2
NS2:
I
6
V
NS2:
T
7
L
NS2:
Q
14
M
NS2:
E
22
G
NS2:
V
26
E
NS2:
D
27
G
NS2:
R
37
S
NS2:
I
40
L
NS2:
S
48
A
NS2:
M
49
V
NS2:
N
60
S
NS2:
A
63
G
NS2:
T
64
K
NS2:
N
67
G
NS2:
E
68
Q
NS2:
A
81
E
NS2:
C
83
V
NS2:
N
85
H
Show more
PA
PA:
V
44
I
PA:
T
61
M
PA:
I
63
V
PA:
T
85
A
PA:
K
113
R
PA:
T
129
I
PA:
V
201
I
PA:
C
212
R
PA:
L
219
T
PA:
K
228
N
PA:
T
263
K
PA:
S
277
P
PA:
K
353
T
PA:
R
361
K
PA:
K
399
E
PA:
P
400
S
PA:
L
425
F
PA:
V
432
I
Show more
PAX
PAX:
V
44
I
PAX:
T
61
M
PAX:
I
63
V
PAX:
T
85
A
PAX:
K
113
R
PAX:
T
129
I
PAX:
S
193
N
PAX:
G
209
E
PAX:
L
210
P
PAX:
S
219
L
PAX:
L
221
R
PAX:
I
222
T
PAX:
N
228
T
PAX:
R
238
Q
PAX:
R
250
Q
PAX:
K
252
R
PB1
PB1:
T
59
S
PB1:
E
75
D
PB1:
K
134
N
PB1:
M
171
V
PB1:
G
177
E
PB1:
M
179
I
PB1:
I
182
T
PB1:
R
430
K
PB1:
E
460
Q
PB1:
T
478
S
PB1:
C
490
F
PB1:
M
535
I
PB1:
D
536
N
PB1:
T
543
S
PB1:
P
558
T
PB1:
A
587
P
PB1:
P
598
L
PB1:
A
609
V
PB1:
G
610
C
PB1:
G
754
R
PB2
PB2:
T
58
A
PB2:
V
109
I
PB2:
V
139
I
PB2:
R
251
K
PB2:
N
334
S
PB2:
K
340
R
PB2:
K
355
R
PB2:
E
362
G
PB2:
D
441
N
PB2:
A
471
T
PB2:
V
478
I
PB2:
V
495
I
PB2:
Q
508
R
PB2:
S
579
P
PB2:
S
590
G
PB2:
P
628
Q
PB2:
M
631
L
PB2:
V
649
I
Show more
Deletions
HA
HA:344
NS1
NS1:27, NS1:76
Insertions
N/A
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