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GS_00035CZ.1
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Display Name: USA/GS_00035CZ.1/2022-11-03
G. A. Santiago,
G. Gonzalez-Morales,
B. Flores,
K. Charriez,
J. L. Munoz-Jordan,
S. Bunch,
N. Cano,
R. Jaber,
A. Morrison,
C. Panzera,
J. Vergara,
R. Zimler,
L. Heberlein &
E. Kopp
Submission details
Submission ID
OQ445967.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-30 20:17:37 UTC
Date released
2025-06-30 20:25:34 UTC
Authors
Author affiliations
Centers for Disease Control and Prevention, Dengue Branch
Clade & Lineage
Clade
4II_B.2
Alignment states and QC metrics
Completeness
95.44%
Length
10163
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
311
Total unknown nucs
0
Sample details
Collection country
USA
Collection subdivision level 1
Florida
Collection date
2022-11-03
Isolate name
US/DB410/2022
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
OQ445967.1
NCBI release date
2023-02-21
NCBI update date
2023-02-21
Nucleotide mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
G
233
A
G
335
A
C
414
T
C
431
T
C
446
A
T
551
C
C
603
T
T
614
C
G
674
A
C
689
T
T
747
C
A
836
T
C
839
T
A
854
G
T
866
C
C
887
T
C
926
G
C
1028
T
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Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
E
E:
M
163
T
E:
E
172
G
E:
K
174
N
E:
Y
233
H
E:
I
351
V
NS1
NS1:
A
6
V
NS1:
K
11
R
NS1:
S
141
T
NS1:
S
152
F
NS1:
V
178
M
NS1:
I
287
V
NS2A
NS2A:
V
35
A
NS2A:
T
49
S
NS2A:
S
65
F
NS2A:
I
72
T
NS2A:
V
79
A
NS2A:
V
112
T
NS2A:
P
159
S
NS2A:
Q
188
H
NS2A:
V
192
I
NS2B
NS2B:
V
74
I
NS2B:
I
95
V
NS2B:
V
116
L
NS3
NS3:
K
14
Q
NS3:
K
213
R
NS3:
P
435
T
NS3:
E
558
K
NS4B
NS4B:
F
13
L
NS4B:
T
56
A
NS5
NS5:
T
269
I
NS5:
T
314
A
NS5:
K
638
R
NS5:
K
649
R
NS5:
V
653
I
NS5:
T
826
V
NS5:
V
886
A
Deletions
None
Insertions
None
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