Warning: Development or Keycloak main database is enabled. Development environment only.
X
GenSpectrum
Dengue 4
Influenza B/Victoria
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
RSV-A
RSV B
Browse
GenSpectrum
Browse
Docs
API docs
GS_00038GN.1
Download
Download FASTA
Download metadata TSV
Display Name: Cuba/GS_00038GN.1/2022-12-20
C. B. F. Vogels,
M. I. Breban,
C. Chaguza,
V. Hill,
L. Paul,
S. Michael,
S. Bunch,
N. Cano,
R. Jaber,
A. Morrison,
C. Panzera,
I. Stryker,
J. Vergara,
R. Zimler,
E. Kopp,
L. Herberlein &
N. D. Grubaugh
Submission details
Submission ID
OQ821635.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-30 20:17:37 UTC
Date released
2025-06-30 20:26:05 UTC
Authors
Author affiliations
Yale University, Yale School of Public Health
INSDC
Bioproject accession
PRJNA951702
INSDC accession
OQ821635.1
NCBI release date
2023-04-19
NCBI update date
2023-05-03
Clade & Lineage
Clade
4II_B.1.2
Alignment states and QC metrics
Completeness
72.48%
Length
9566
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
255
Total unknown nucs
1848
Sample details
Collection country
Cuba
Collection date
2022-12-20
Isolate name
DENV4/Cuba/2022-12-20/Yale-DN00950
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Nucleotide mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
T
584
C
C
606
T
A
809
G
C
839
T
G
842
A
G
848
A
A
884
G
C
926
T
G
954
A
T
971
C
A
1022
G
C
1043
T
A
1052
G
T
1076
C
C
1129
T
T
1211
C
C
1232
T
G
1238
A
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
E
E:
V
6
I
E:
S
64
L
E:
M
163
T
E:
K
174
E
E:
A
222
T
E:
I
351
V
E:
S
354
A
NS1
NS1:
A
6
V
NS1:
K
11
R
NS1:
T
105
I
NS1:
V
108
A
NS1:
L
153
F
NS1:
I
212
M
NS1:
K
214
R
NS1:
S
239
T
NS1:
D
290
N
NS2A
NS2A:
Q
2
P
NS2A:
V
35
A
NS2A:
V
112
T
NS2A:
S
114
A
NS2A:
V
144
L
NS2A:
P
159
S
NS2A:
V
161
I
NS3
NS3:
K
14
Q
NS3:
P
435
T
NS3:
R
594
K
NS4B
NS4B:
V
18
A
NS4B:
V
71
I
NS4B:
M
84
V
NS5
NS5:
L
126
F
NS5:
K
175
N
NS5:
H
247
Y
NS5:
K
649
R
NS5:
I
692
V
NS5:
T
826
I
NS5:
H
832
Q
Deletions
None
Insertions
None
Load sequences