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GS_00038R3.1
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Display Name: Nicaragua/GS_00038R3.1/2022-10-22
C. B. F. Vogels,
M. I. Breban,
C. Chaguza,
V. Hill,
L. Paul,
S. Michael,
S. Bunch,
N. Cano,
R. Jaber,
A. Morrison,
C. Panzera,
I. Stryker,
J. Vergara,
R. Zimler,
E. Kopp,
L. Herberlein &
N. D. Grubaugh
Submission details
Submission ID
OQ821644.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-30 20:17:37 UTC
Date released
2025-06-30 20:26:05 UTC
Authors
Author affiliations
Yale University, Yale School of Public Health
INSDC
Bioproject accession
PRJNA951702
INSDC accession
OQ821644.1
NCBI release date
2023-04-19
NCBI update date
2023-05-03
Clade & Lineage
Clade
4II_B.2
Alignment states and QC metrics
Completeness
80.01%
Length
10364
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
283
Total unknown nucs
1844
Sample details
Collection country
Nicaragua
Collection date
2022-10-22
Isolate name
DENV4/Nicaragua/2022-10-22/Yale-DN00899
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Nucleotide mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
G
77
A
C
87
T
A
224
G
T
255
G
G
296
A
G
335
A
C
414
T
C
431
T
G
451
C
C
452
A
C
839
T
A
854
G
T
866
C
C
887
T
C
1028
T
C
1075
T
T
1100
C
G
1148
A
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Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
C
C:
F
52
V
E
E:
T
46
I
E:
M
163
T
E:
E
172
G
E:
K
174
N
E:
Y
233
H
E:
I
351
V
NS1
NS1:
A
6
V
NS1:
K
11
R
NS1:
S
152
F
NS1:
V
178
M
NS2A
NS2A:
V
35
A
NS2A:
T
49
S
NS2A:
S
65
F
NS2A:
I
72
T
NS2A:
V
79
A
NS2A:
V
112
T
NS2A:
P
159
S
NS2A:
Q
188
H
NS2A:
V
192
I
NS2B
NS2B:
V
74
I
NS2B:
I
95
V
NS2B:
V
116
L
NS3
NS3:
K
14
Q
NS3:
K
213
R
NS3:
P
435
T
NS4A
NS4A:
I
78
M
NS4A:
L
94
M
NS4B
NS4B:
F
13
L
NS4B:
T
56
A
NS5
NS5:
R
246
K
NS5:
T
314
A
NS5:
K
649
R
NS5:
V
653
I
NS5:
G
676
S
NS5:
I
837
V
Deletions
None
Insertions
None
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