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GS_00038TZ.1
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Display Name: El_Salvador/GS_00038TZ.1/2022-08-24
C. B. F. Vogels,
M. I. Breban,
C. Chaguza,
V. Hill,
L. Paul,
S. Michael,
S. Bunch,
N. Cano,
R. Jaber,
A. Morrison,
C. Panzera,
I. Stryker,
J. Vergara,
R. Zimler,
E. Kopp,
L. Herberlein &
N. D. Grubaugh
Submission details
Submission ID
OQ821646.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-30 20:17:37 UTC
Date released
2025-06-30 20:26:05 UTC
Authors
Author affiliations
Yale University, Yale School of Public Health
INSDC
Bioproject accession
PRJNA951702
INSDC accession
OQ821646.1
NCBI release date
2023-04-19
NCBI update date
2023-05-03
Clade & Lineage
Clade
4II_B.2
Alignment states and QC metrics
Completeness
92.25%
Length
10376
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
316
Total unknown nucs
552
Sample details
Collection country
El Salvador
Collection date
2022-08-24
Isolate name
DENV4/El_Salvador/2022-08-24/Yale-DN01037
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Nucleotide mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
G
77
A
C
87
T
G
335
A
C
350
T
C
365
T
C
414
T
C
431
T
T
444
C
C
445
A
C
447
T
C
449
G
A
450
T
G
451
C
C
452
A
C
548
T
T
551
C
C
603
G
T
614
C
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
2K
2K:
I
21
V
E
E:
I
68
V
E:
M
163
T
E:
E
172
G
E:
K
174
N
E:
Y
233
H
E:
I
351
V
NS1
NS1:
A
6
V
NS1:
K
11
R
NS1:
S
152
F
NS1:
V
178
M
NS1:
I
287
V
NS2A
NS2A:
V
35
A
NS2A:
T
49
S
NS2A:
S
65
F
NS2A:
I
72
T
NS2A:
V
79
A
NS2A:
V
112
T
NS2A:
L
113
F
NS2A:
P
159
S
NS2A:
Q
188
H
NS2A:
V
192
I
NS2B
NS2B:
I
73
V
NS2B:
V
74
I
NS2B:
I
95
V
NS2B:
V
116
L
NS3
NS3:
T
13
I
NS3:
K
14
Q
NS3:
K
213
R
NS3:
P
435
T
NS3:
E
514
K
NS3:
E
558
K
NS4B
NS4B:
F
13
L
NS4B:
T
56
A
NS5
NS5:
T
269
I
NS5:
T
314
A
NS5:
T
630
A
NS5:
K
649
R
NS5:
V
653
I
NS5:
G
676
S
NS5:
T
826
V
prM
prM:
S
2
H
prM:
L
55
V
Deletions
None
Insertions
None
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