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GS_0003AEQ.1
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Display Name: USA/GS_0003AEQ.1/2023-10-12
M. Mitchell,
O. Tekin &
Y. Dong
Submission details
Submission ID
OR821957.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-30 20:17:37 UTC
Date released
2025-06-30 20:26:05 UTC
Authors
Author affiliations
FLDOH, BPHL
INSDC
Bioproject accession
PRJNA973096
Biosample accession
SAMN38285128
INSDC accession
OR821957.1
NCBI release date
2023-11-22
NCBI update date
2025-02-07
SRA run accession
SRR26858394
Clade & Lineage
Clade
4II_B.2
Alignment states and QC metrics
Completeness
97.44%
Length
10376
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
357
Total unknown nucs
0
Sample details
Collection country
USA
Collection subdivision level 1
FL
Collection date
2023-10-12
Isolate name
DENV-4/USA/FL-BPHL-0159/2023
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Nucleotide mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
G
77
A
C
87
T
T
124
C
A
224
G
C
251
T
G
335
A
C
414
T
C
431
T
T
444
C
C
445
A
C
447
T
C
449
G
A
450
T
G
451
C
C
452
A
G
497
A
T
551
C
T
593
C
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Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
C
C:
V
8
A
E
E:
M
163
T
E:
E
172
G
E:
K
174
N
E:
Y
233
H
E:
V
335
I
E:
I
351
V
NS1
NS1:
A
6
V
NS1:
K
11
R
NS1:
S
141
T
NS1:
S
152
F
NS1:
V
178
M
NS1:
I
287
V
NS2A
NS2A:
V
35
A
NS2A:
T
49
S
NS2A:
S
65
F
NS2A:
I
72
T
NS2A:
V
79
A
NS2A:
V
112
T
NS2A:
P
159
S
NS2A:
Q
188
H
NS2A:
V
192
I
NS2B
NS2B:
V
74
I
NS2B:
I
95
V
NS2B:
V
116
L
NS3
NS3:
K
14
Q
NS3:
K
213
R
NS3:
D
353
E
NS3:
P
435
T
NS3:
E
558
K
NS3:
R
584
G
NS4A
NS4A:
I
78
M
NS4A:
L
94
M
NS4B
NS4B:
F
13
L
NS4B:
K
19
R
NS4B:
T
56
A
NS5
NS5:
R
246
K
NS5:
T
314
A
NS5:
K
649
R
NS5:
V
653
I
NS5:
G
676
S
NS5:
T
791
I
NS5:
T
826
V
prM
prM:
S
2
H
Deletions
None
Insertions
None
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