Warning: Development or Keycloak main database is enabled. Development environment only.
X
GenSpectrum
Dengue 4
Influenza B/Victoria
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
RSV-A
RSV B
Browse
GenSpectrum
Browse
Docs
API docs
GS_0003K09.1
Download
Download FASTA
Download metadata TSV
Display Name: India/GS_0003K09.1/2022-09-12
A. Tripathi &
S. Mukherjee
Submission details
Submission ID
PP474374.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-30 20:17:37 UTC
Date released
2025-06-30 20:27:05 UTC
Authors
Author affiliations
Calcutta School of Tropical Medicine, Biochemistry and Medical Biotechnology
Clade & Lineage
Clade
4I_B.1
Alignment states and QC metrics
Completeness
13.90%
Length
1485
Total ambiguous nucs
5
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
119
Total unknown nucs
0
Sample details
Collection country
India
Collection date
2022-09-12
Isolate name
D42291
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PP474374.1
NCBI release date
2024-03-18
NCBI update date
2024-03-18
Nucleotide mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
A
956
G
A
959
G
C
1004
T
C
1028
T
C
1075
T
T
1076
C
A
1085
G
C
1088
T
G
1122
A
A
1130
C
C
1139
T
T
1145
C
T
1181
C
G
1184
C
G
1196
A
C
1199
T
T
1211
C
T
1257
C
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
E
E:
T
46
I
E:
E
62
K
E:
I
132
V
E:
M
163
T
E:
K
200
T
E:
Y
233
H
E:
K
346
N
E:
I
352
N
E:
L
357
F
E:
N
366
S
E:
E
368
K
E:
N
384
D
E:
F
429
L
E:
I
455
V
E:
T
478
S
Deletions
None
Insertions
None
Load sequences