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GS_0003LNX.1
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Display Name: Panama/GS_0003LNX.1/2023-10-14
M. Chen-German,
D. Arauz,
C. Aguilar,
M. Vega,
C. Gonzalez,
J. Gondola,
L. Moreno,
L. Cerezo,
L. Franco,
J. Mendez-Rico,
J. M. Pascale,
S. Lopez-Verges,
A. A. Martinez,
B. Moreno,
A. Martinez,
O. Chavarria &
A. Moreno
Submission details
Submission ID
PQ014892.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-30 20:17:37 UTC
Date released
2025-06-30 20:27:05 UTC
Authors
Author affiliations
Gorgas Memorial Institute for Health Studies, Virology and Biotechnology Research
Clade & Lineage
Clade
4II_B.2
Alignment states and QC metrics
Completeness
96.04%
Length
10229
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
344
Total unknown nucs
2
Sample details
Collection country
Panama
Collection subdivision level 1
Cocle
Collection date
2023-10-14
Isolate name
DENV4-A000654
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PQ014892.1
NCBI release date
2024-10-29
NCBI update date
2024-10-29
Nucleotide mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
A
224
G
G
335
A
G
356
A
A
362
T
C
414
T
C
431
T
T
444
C
C
445
A
C
447
T
C
452
T
G
497
A
T
551
C
T
593
C
C
603
T
T
614
C
G
674
A
C
689
T
C
839
T
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Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
E
E:
M
163
T
E:
E
172
G
E:
K
174
N
E:
Y
233
H
E:
I
351
V
NS1
NS1:
A
6
V
NS1:
S
141
T
NS1:
S
152
F
NS1:
V
178
M
NS1:
I
287
V
NS2A
NS2A:
V
35
A
NS2A:
T
49
S
NS2A:
S
65
F
NS2A:
I
72
T
NS2A:
V
79
A
NS2A:
V
112
T
NS2A:
P
159
S
NS2A:
Q
188
H
NS2A:
V
192
I
NS2B
NS2B:
V
74
I
NS2B:
I
95
V
NS2B:
V
116
L
NS3
NS3:
K
14
Q
NS3:
K
213
R
NS3:
P
435
T
NS3:
E
558
K
NS4A
NS4A:
V
58
I
NS4A:
L
94
M
NS4B
NS4B:
F
13
L
NS4B:
T
56
A
NS5
NS5:
R
246
K
NS5:
T
314
A
NS5:
Q
548
K
NS5:
K
649
R
NS5:
V
653
I
NS5:
G
676
S
NS5:
T
826
V
NS5:
I
837
V
prM
prM:
S
2
H
Deletions
None
Insertions
None
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