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GS_0003SAG.1

Display Name: Thailand/GS_0003SAG.1/2023-11-13
P. Sittikul, I. Wirasit, K. Taoma, J. Rattanamahaphoom, P. Sriburin, W. Nuprasert, K. Limkittikul, C. Rotejanaprasert & S. Chatchen

Submission details

Submission ID
PV663145.1
Submitting group
Date submitted
2025-06-30 20:17:37 UTC
Date released
2025-06-30 20:27:35 UTC

Authors

Author affiliations
Mahidol university, Department of Tropical Pediatrics, Faculty of Tropical Medicine

Clade & Lineage

Clade
4II_A.1

Alignment states and QC metrics

Completeness
13.94%
Length
1485
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
93
Total unknown nucs
0

Sample details

Collection country
Thailand
Collection subdivision level 1
Bangkok
Collection date
2023-11-13
Isolate name
ID0099

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2025-05-30
NCBI update date
2025-05-30

Nucleotide mutations

Mutations called relative to the NC_002640.1 reference

Substitutions

  • A953G
  • A959G
  • A986G
  • C1005T
  • A1025G
  • T1076C
  • C1088T
  • C1127T
  • A1130G
  • T1145C
  • A1154T
  • G1184C
  • A1193G
  • G1196A
  • C1232T
  • C1244T
  • C1297T
  • T1301C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_002640.1 reference

    Substitutions

    E

  • E:S120L
  • E:M163T
  • E:L357F
  • E:N384D
    • Deletions
    None
    Insertions
    None