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Influenza A/H5N1
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GS_000D5UE.1
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Display Name: GS_000D5UE.1/2024-04-05
Lauring,
A. S.; Papalambros,
L. K.
Submission details
Submission ID
PP896780.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-11 16:20:33 UTC
Date released
2024-12-11 16:32:37 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-11 16:20
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
University Of Michigan, Internal Medicine - Infectious Disease
INSDC
Bioproject accession
PRJNA1079770
INSDC accession
PP896780.1
NCBI release date
2024-06-16
NCBI update date
2024-06-16
Alignment states and QC metrics
Completeness
98.51%
Length
15127
Total ambiguous nucs
0
Total deleted nucs
3
Total frame shifts
0
Total inserted nucs
2
Total SNPs
129
Total unknown nucs
133
Sample details
Collection country
USA
Collection date
2024-04-05
Isolate name
hRSV-B-G43S19N1
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
B.D.E.1
Nucleotide mutations
Substitutions
A
134
G
G
513
T
G
579
A
A
581
G
C
688
T
T
838
C
C
998
A
G
1385
A
G
1732
A
T
1846
C
C
2074
T
A
2101
T
C
2198
T
C
2287
T
C
2554
T
C
2691
T
T
2904
C
A
3012
G
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Deletions
973, 4586, 5605
Insertions
ins_15092:AT
Amino acid mutations
Substitutions
F
F:
R
42
K
F:
T
121
A
F:
S
190
N
F:
S
211
N
F:
S
389
P
G
G:
A
74
V
G:
S
100
G
G:
T
131
A
G:
I
137
T
G:
K
199
T
G:
P
214
S
G:
P
221
L
G:
I
252
T
G:
K
256
N
G:
I
268
T
G:
A
269
V
G:
S
275
P
G:
L
284
I
G:
Y
285
H
L
L:
G
146
D
L:
K
570
R
L:
V
1965
I
L:
I
1969
T
L:
T
1987
I
N
N:
V
97
I
Deletions
None
Insertions
None
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