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RSV B
Influenza A/H5N1
RSV-A
RSV B
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GS_000D9V8.1
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Display Name: GS_000D9V8.1/2024-04-13
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnker,
L.; Wang,
X.
Submission details
Submission ID
PP957821.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-11 16:20:33 UTC
Date released
2024-12-11 16:32:37 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-11 16:20
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN42037006
INSDC accession
PP957821.1
NCBI release date
2024-07-03
NCBI update date
2024-07-03
SRA run accession
SRR29541209
Alignment states and QC metrics
Completeness
95.98%
Length
15141
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
4
Total SNPs
136
Total unknown nucs
528
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-04-13
Isolate name
MN-MDH-RSVB-00808
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
B.D.E.1
Nucleotide mutations
Substitutions
A
480
G
G
513
T
G
579
A
C
998
A
G
1385
A
G
1732
A
C
1804
T
T
1846
C
T
2014
C
C
2074
T
C
2191
T
C
2198
T
C
2554
T
G
2607
A
C
2691
T
C
2707
T
G
3036
C
A
3060
G
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Deletions
4586
Insertions
ins_15092:ATAT
Amino acid mutations
Substitutions
F
F:
S
190
N
F:
S
211
N
F:
S
389
P
G
G:
V
45
A
G:
A
74
V
G:
S
100
G
G:
H
112
Y
G:
T
131
A
G:
I
137
T
G:
P
214
S
G:
P
221
L
G:
I
252
T
G:
T
253
A
G:
K
256
N
G:
I
268
T
G:
S
275
P
G:
Y
285
H
L
L:
K
570
R
L:
R
1759
K
L:
T
1987
I
L:
I
2152
V
N
N:
V
97
I
Deletions
None
Insertions
None
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