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Influenza A/H5N1
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GS_000DSHF.1
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Display Name: GS_000DSHF.1/2024-04-08
Lauring,
A. S.; Bendall,
E. E.
Submission details
Submission ID
PQ083707.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-11 16:20:33 UTC
Date released
2024-12-11 16:33:07 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-11 16:20
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
University of Michigan, Department of Microbiology
INSDC
Bioproject accession
PRJNA1079770
INSDC accession
PQ083707.1
NCBI release date
2024-07-31
NCBI update date
2024-07-31
Alignment states and QC metrics
Completeness
94.32%
Length
14943
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
3
Total SNPs
131
Total unknown nucs
585
Sample details
Collection country
USA
Collection date
2024-04-08
Isolate name
hRSV-B-G43S27Q2
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
B.D.E.1
Nucleotide mutations
Substitutions
C
182
T
C
284
T
C
405
T
G
513
T
G
579
A
C
998
A
A
1017
G
C
1247
T
G
1385
A
C
1429
T
C
1717
T
G
1732
A
T
1846
C
T
1990
C
C
2074
T
C
2198
T
C
2519
A
C
2554
T
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Deletions
973, 4586
Insertions
ins_5317:AAA
Amino acid mutations
Substitutions
F
F:
S
190
N
F:
S
211
N
F:
S
389
P
G
G:
A
74
V
G:
S
100
G
G:
T
131
A
G:
I
137
T
G:
P
214
S
G:
P
221
L
G:
I
252
T
G:
K
256
N
G:
I
268
T
G:
A
269
V
G:
S
275
P
G:
Y
285
L
L
L:
K
111
R
L:
K
570
R
L:
N
839
S
L:
T
1987
I
L:
V
2008
I
N
N:
V
97
I
P
P:
T
72
N
Deletions
None
Insertions
ins_G:224:K
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