Warning: Development or Keycloak main database is enabled. Development environment only.
X
GenSpectrum
RSV B
Influenza A/H5N1
RSV-A
RSV B
Browse
Loculus
Browse
Docs
API docs
GS_000DV61.1
Download
Download FASTA
Download metadata TSV
Display Name: GS_000DV61.1/2024-05-02
Rothstein,
A. P.; Qiu,
X.; Collins,
S.; Muir,
G.; Simas,
A.; Sum,
A.; Lu,
B.; Cosca,
B.; Girinathan,
B.; Leeson,
P.; Phillipson,
C. W.; Plocik,
A.; Simen,
B.
Submission details
Submission ID
PQ117661.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-11 16:20:33 UTC
Date released
2024-12-11 16:33:37 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-11 16:20
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity
Alignment states and QC metrics
Completeness
80.43%
Length
15139
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
4
Total SNPs
130
Total unknown nucs
2894
Sample details
Collection country
USA
Collection subdivision level 1
Washington
Collection date
2024-05-02
Isolate name
GKISBBBB54556
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PQ117661.1
NCBI release date
2024-08-07
NCBI update date
2024-08-07
Clade & Lineage
Lineage
B.D.E.1
Nucleotide mutations
Substitutions
A
134
G
G
513
T
G
579
A
C
688
T
C
998
A
C
1038
T
G
1385
A
A
1414
G
A
1702
T
G
1732
A
C
1792
T
C
1794
T
T
1846
C
C
2074
T
C
2198
T
C
2554
T
A
2928
G
C
3146
T
Show more
Deletions
973, 4586
Insertions
ins_15092:ATAT
Amino acid mutations
Substitutions
F
F:
S
190
N
F:
S
211
N
F:
S
372
R
F:
S
389
P
G
G:
A
74
V
G:
K
85
E
G:
S
100
G
G:
K
103
E
G:
T
131
A
G:
I
137
T
G:
P
214
S
G:
P
221
L
G:
I
252
T
G:
K
256
N
G:
S
265
P
G:
I
268
T
G:
S
275
P
G:
Y
285
H
G:
P
289
S
L
L:
I
275
T
L:
S
377
L
L:
L
384
S
L:
Q
563
H
L:
K
570
R
L:
V
1965
I
L:
D
1981
N
L:
T
1987
I
N
N:
V
97
I
N:
T
233
I
Deletions
None
Insertions
None
Load sequences