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Influenza A/H5N1
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GS_000E0CG.1
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Display Name: GS_000E0CG.1/2024-05-17
Roychoudhury,
P.; Xie,
X.; Sereewit,
J.; Ellis,
S.; Greninger,
A.
Submission details
Submission ID
PQ390743.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-11 16:20:33 UTC
Date released
2024-12-11 16:33:37 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-11 16:20
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
University of Washington, Laboratory Medicine and Pathology
Alignment states and QC metrics
Completeness
99.88%
Length
15255
Total ambiguous nucs
18
Total deleted nucs
5
Total frame shifts
0
Total inserted nucs
38
Total SNPs
145
Total unknown nucs
0
Sample details
Collection country
USA
Collection subdivision level 1
Washington
Collection date
2024-05-17
Isolate name
WA-UW-76197
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PQ390743.1
NCBI release date
2024-10-06
NCBI update date
2024-10-28
Clade & Lineage
Lineage
B.D.4.1.1
Nucleotide mutations
Substitutions
G
1
A
C
3
G
A
23
G
G
231
A
G
434
A
A
511
G
G
513
T
G
546
A
G
579
A
C
610
T
C
628
A
T
760
C
G
805
A
C
817
T
C
904
A
C
1005
T
A
1111
G
A
1357
G
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Deletions
973, 7402, 15200-15202
Insertions
ins_15210:GTT, ins_15222:TTATTT, ins_15089:ATA, ins_0:ACTACAAACTTGCACACTCGAAAAAA
Amino acid mutations
Substitutions
F
F:
M
115
I
F:
S
190
N
F:
S
211
N
G
G:
A
74
V
G:
R
98
G
G:
P
101
L
G:
H
112
N
G:
S
119
P
G:
I
252
T
G:
S
265
P
G:
I
268
T
G:
A
269
V
G:
L
270
P
G:
S
275
P
G:
S
283
P
G:
L
284
P
G:
Y
285
H
G:
S
309
F
L
L:
K
192
R
L:
I
1588
T
L:
V
1716
A
L:
I
1719
T
L:
T
1742
M
L:
F
1760
L
L:
T
1987
I
L:
E
2165
D
N
N:
V
97
I
NS1
NS1:
V
59
I
NS1:
M
126
I
SH
SH:
F
10
L
Deletions
None
Insertions
None
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