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GS_000E3MU.1

Display Name: GS_000E3MU.1/2024-07-08
Acuna, D.; Palau, M. J.; Vera, A.; Vescina, C. M.; Trevino, N. P.; Eguiguren, M. P.; Fernandez Gago, G.; Alancay, A.; Nadalich, V.; Angeletti, A.; Cordero, A.; Irazoqui, M.; Viegas, M.

Submission details

Submission ID
PQ492106.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-11 16:20:33 UTC
Date released
2024-12-11 16:33:37 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-11 16:20insdc_ingest_userOPEN

Authors

Author affiliations
Conicet (National Council for Scientific and Technical Research), Exacts Sciences School, National University of la Plata, Argentina

Alignment states and QC metrics

Completeness
98.29%
Length
14960
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
0
Total SNPs
124
Total unknown nucs
0

Sample details

Collection country
Argentina
Collection date
2024-07-08
Isolate name
RSVB/Argentina/PAIS-HSML/33/2024-07-08

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
PQ492106.1
NCBI release date
2024-10-28
NCBI update date
2024-10-28

Clade & Lineage

Lineage
B.D.E.1.1

Nucleotide mutations

Substitutions

  • C169T
  • A276G
  • G332A
  • G513T
  • G579A
  • C628T
  • C998A
  • T1333C
  • G1385A
  • G1732A
  • C2074T
  • C2198T
  • C2554T
  • C2691T
  • C2707T
  • G2977A
  • C3000T
  • G3036C
    • Deletions
    973, 4586
    Insertions
    None

    Amino acid mutations

    Substitutions

    F

  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:L250P
  • G:I252T
  • G:K256N
  • G:I268T
  • G:S275P
  • G:Y285H

    • L

  • L:K570R
  • L:N590S
  • L:R1759K
  • L:T1987I

    • N

  • N:V97I

    • NS1

  • NS1:T38I
  • NS1:K74E

    • P

  • P:D225N

    • SH

  • SH:I49M
    • Deletions
    None
    Insertions
    None