Warning: Development or Keycloak main database is enabled. Development environment only.

GS_000E6CA.1

Display Name: GS_000E6CA.1/2024-07-30
Acuna, D.; Irazoqui, M.; Palau, M. J.; Vera, A.; Vescina, C. M.; Trevino, N. P.; Eguiguren, M. P.; Fernandez Gago, G.; Alancay, A.; Nadalich, V.; Angeletti, A.; Cordero, A.; Viegas, M.

Submission details

Submission ID
PQ600482.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-11 16:20:33 UTC
Date released
2024-12-11 16:33:37 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-11 16:20insdc_ingest_userOPEN

Authors

Author affiliations
CONICET (National Council for Scientific and Technical Research), Exacts Sciences School, National University of la Plata

Alignment states and QC metrics

Completeness
99.99%
Length
15225
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
4
Total SNPs
89
Total unknown nucs
1

Sample details

Collection country
Argentina
Collection subdivision level 1
Buenos Aires, La Plata
Collection date
2024-07-30
Isolate name
HRSV/B/Argentina/PAIS-HSML/55/2024-07-30

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
PQ600482.1
NCBI release date
2024-11-25
NCBI update date
2024-11-25

Clade & Lineage

Lineage
B.D.E.1

Nucleotide mutations

Substitutions

  • G458C
  • G513T
  • G579A
  • T670C
  • C772A
  • G1385A
  • G1768A
  • T1846C
  • A1864G
  • C2074T
  • C2198T
  • C2691T
  • A2925T
  • G3036C
  • A3060G
  • C3067T
  • C3082T
  • C3146T
    • Deletions
    4586
    Insertions
    ins_15092:ATAT

    Amino acid mutations

    Substitutions

    F

  • F:F12I
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P221L
  • G:I252T
  • G:I268T
  • G:S275P
  • G:Y285H

    • L

  • L:S169P
  • L:C195Y
  • L:S1239N
  • L:R1759K
  • L:T1987I

    • N

  • N:V97I
    • Deletions
    None
    Insertions
    None