Warning: Development or Keycloak main database is enabled. Development environment only.

GS_000QGSJ.1

Display Name: Mexico/GS_000QGSJ.1/2005-01-01
M. C. Zody, M. Henn, R. M. Newman, I. Bosch, D. Schmidt, G. Comach, A. Rothman, T. W. Poon, P. Charlebois, B. Weiner, X. Yang, L. Larson, M. E. Piper, M. Fitzgerald, A. Lui, S. Young, S. Gargeya, J. Levin, C. Malboeuf, J. Qu, A. M. Berlin, S. B. Chapman, C. Murphy, J. Wortman, C. Nusbaum & B. Birren

Submission details

Submission ID
KF955356.1
Submitting group
Date submitted
2025-12-11 14:52:16 UTC
Date released
2025-12-11 14:59:10 UTC

Authors

Author affiliations
Broad Institute of MIT & Harvard

INSDC

Bioproject accession
INSDC accession
NCBI release date
2014-01-19
NCBI update date
2014-01-19

Clade & Lineage

Clade
2III_D.1

Alignment states and QC metrics

Completeness
69.92%
Frame shifts
[]
Length
9483
Total ambiguous nucs
0
Total deleted nucs
44
Total frame shifts
0
Total inserted nucs
1
Total SNPs
575
Total unknown nucs
2029

Sample details

Collection country
Mexico
Collection date
2005-01-01
Isolate name
DENV-2/MX/BID-V3766/2005

Host

Host name scientific
Homo sapiens
Host taxon id

Nucleotide mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

  • T1057C
  • G1092A
  • C1101T
  • G1122A
  • A1131G
  • T1152G
  • C1155T
  • C1179T
  • G1207A
  • C1255T
  • C1293T
  • G1295C
  • T1323C
  • A1329G
  • C1338T
  • T1353C
  • G1374A
  • T1383C
    • Deletions
    10487-10494, 10500, 10501, 10506-10517, 10531-10535, 10543-10559
    Insertions
    ins_10392:A

    Amino acid mutations

    Mutations called relative to the NC_001474.2 reference

    Substitutions

    E

  • E:V91I
  • E:R120T
  • E:N203D
  • E:V308I
  • E:M340T
  • E:S474P
  • E:T478S
  • E:I484V
  • E:V491A

    • NS1

  • NS1:K85Q
  • NS1:L86F
  • NS1:P106A
  • NS1:K172R
  • NS1:I212M
  • NS1:N222S
  • NS1:N246H
  • NS1:L247F
  • NS1:I264T
  • NS1:T265A
  • NS1:F279L
  • NS1:D281E

    • NS2A

  • NS2A:V5I
  • NS2A:V27I
  • NS2A:V38A
  • NS2A:T104A
  • NS2A:V109A
  • NS2A:M136I
  • NS2A:L153S
  • NS2A:V174A
  • NS2A:T189A

    • NS2B

  • NS2B:L109V

    • NS3

  • NS3:M13V
  • NS3:G14E
  • NS3:K28R
  • NS3:K61R
  • NS3:L115I
  • NS3:A120T
  • NS3:I140V
  • NS3:K142R

    • NS4B

  • NS4B:V102G
  • NS4B:A109G
  • NS4B:F112L
  • NS4B:D156E
  • NS4B:Y160S
  • NS4B:V175I

    • NS5

  • NS5:I27V
  • NS5:I135T
  • NS5:P154L
  • NS5:V156I
  • NS5:T161P
  • NS5:N166T
  • NS5:L167R
  • NS5:S225T
  • NS5:R246K
  • NS5:Y247H
  • NS5:N322H
  • NS5:T344P
  • NS5:D345A
  • NS5:T347P
  • NS5:Q351H
  • NS5:D360A
  • NS5:T361P
  • NS5:E365D
    • Deletions
    None
    Insertions
    None