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GS_000QJH0.1

Display Name: Colombia/GS_000QJH0.1/2000-01-01
M. C. Zody, R. M. Newman, M. Henn, I. Bosch, D. Schmidt, G. Comach, A. Rothman, T. W. Poon, P. Charlebois, B. Weiner, X. Yang, M. E. Piper, M. Fitzgerald, C. McCowan, S. Young, S. Gargeya, J. Levin, C. Malboeuf, J. Qu, A. Ireland, S. B. Chapman, C. Murphy, J. Wortman, C. Nusbaum & B. Birren

Submission details

Submission ID
KJ189305.1
Submitting group
Date submitted
2025-12-11 14:52:16 UTC
Date released
2025-12-11 14:59:10 UTC

Authors

Author affiliations
Broad Institute of MIT & Harvard

INSDC

Bioproject accession
INSDC accession
NCBI release date
2014-02-10
NCBI update date
2014-02-10

Clade & Lineage

Clade
2III_D.3

Alignment states and QC metrics

Completeness
97.70%
Frame shifts
[]
Length
10478
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
2
Total SNPs
684
Total unknown nucs
0

Sample details

Collection country
Colombia
Collection date
2000-01-01
Isolate name
DENV-2/CO/BID-V7294/2000

Host

Host name scientific
Homo sapiens
Host taxon id

Nucleotide mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

  • A122G
  • A125G
  • C126T
  • G168A
  • G213A
  • A219C
  • G246T
  • T292C
  • G294A
  • G297A
  • A309G
  • T312C
  • T330C
  • T384C
  • A396G
  • T397A
  • T399A
  • A406G
    • Deletions
    None
    Insertions
    ins_76:T, ins_10392:A

    Amino acid mutations

    Mutations called relative to the NC_001474.2 reference

    Substitutions

    C

  • C:K9R
  • C:N10S
  • C:S101T
  • C:M104V
  • C:I106V
  • C:V112A

    • E

  • E:M6I
  • E:V91I
  • E:R120T
  • E:N203D
  • E:V308I
  • E:M340T
  • E:T478S
  • E:I484V
  • E:V491A

    • NS1

  • NS1:I212M
  • NS1:N222S
  • NS1:L247F
  • NS1:V251A
  • NS1:H261Y
  • NS1:I264T
  • NS1:T265A
  • NS1:D281E

    • NS2A

  • NS2A:V5I
  • NS2A:T104A
  • NS2A:V109A
  • NS2A:M136I
  • NS2A:L153S
  • NS2A:V174A
  • NS2A:T189A

    • NS2B

  • NS2B:L109V

    • NS3

  • NS3:M13V
  • NS3:K28R
  • NS3:K61R
  • NS3:L115I
  • NS3:A120T
  • NS3:I140V
  • NS3:R186K
  • NS3:R248K
  • NS3:I333M
  • NS3:T399A
  • NS3:R549K
  • NS3:R561K
  • NS3:V567I

    • NS4A

  • NS4A:D23N
  • NS4A:R76K

    • NS4B

  • NS4B:A19T
  • NS4B:Q22E
  • NS4B:P23S
  • NS4B:F112L
  • NS4B:D156E
  • NS4B:V175I

    • NS5

  • NS5:A19T
  • NS5:I135T
  • NS5:V156I
  • NS5:A196T
  • NS5:S225T
  • NS5:R246K
  • NS5:Y247H
  • NS5:S429G
  • NS5:K437R
  • NS5:E501G
  • NS5:K514R
  • NS5:S523G
  • NS5:E558K
  • NS5:V628I
  • NS5:I637A
  • NS5:L670I
  • NS5:I687V
  • NS5:I717V

    • prM

  • prM:S15G
  • prM:M39I
  • prM:M83T
  • prM:M135I
  • prM:T162A
    • Deletions
    None
    Insertions
    None