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Display Name: GS_000X3QM.1/2024-02-27
Roychoudhury, P.; Klein, E. J.; Strelitz, B.; Grioni, H.; Moline, H. L.; Tannis, A.; Ellis, S. E.; Xie, H.; Kong, K.; Sereewit, J.; Greninger, A.; Englund, J. A.

Submission details

Submission ID
PP770453.1
Date submitted
2024-12-11 16:22:19 UTC
Date released
2024-12-11 16:40:50 UTC

Data use terms

Data use terms
OPEN

Authors

Author affiliations
University of Washington, Laboratory Medicine and Pathology

Alignment states and QC metrics

Completeness
99.95%
Length
15222
Total ambiguous nucs
1
Total deleted nucs
4
Total frame shifts
0
Total inserted nucs
7
Total SNPs
229
Total unknown nucs
1

Sample details

Collection country
USA
Collection subdivision level 1
Washington
Collection date
2024-02-27
Isolate name
WA-SCH-3062680

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2024-05-14
NCBI update date
2024-10-28

Clade & Lineage

Lineage
A.D.5.2

Nucleotide mutations

Substitutions

  • T66A
  • A67G
  • G69A
  • C90T
  • C183T
  • G198A
  • T246C
  • T270G
  • G376T
  • T673C
  • T675C
  • T697C
  • A813G
  • T886C
  • A940C
  • A1009G
  • C1012T
  • A1021G
  • Deletions
    4592, 7516-7518
    Insertions
    ins_15225:ACAC, ins_15213:GG, ins_15217:T

    Amino acid mutations

    Substitutions

    F

  • F:A103T
  • F:T122A
  • G

  • G:A57V
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:P206Q
  • G:K209R
  • G:G224E
  • G:T235I
  • G:S243I
  • G:L248I
  • G:G254R
  • G:K262E
  • G:I265L
  • G:D284G
  • G:V303A
  • G:Y304H
  • G:L310P
  • G:T319I
  • G:T320A
  • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:N1723G
  • L:E1725G
  • L:S1730I
  • L:G1731D
  • L:A1927T
  • L:V1943D
  • M

  • M:M73L
  • N

  • N:V352A
  • NS1

  • NS1:G103C
  • NS2

  • NS2:I26T
  • NS2:K72R
  • P

  • P:L55P
  • P:T69I
  • P:R81K
  • Deletions
    None
    Insertions
    None