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GS_000X43V.1
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Display Name: GS_000X43V.1/2024-02-29
Roychoudhury,
P.; Klein,
E. J.; Strelitz,
B.; Grioni,
H.; Moline,
H. L.; Tannis,
A.; Ellis,
S. E.; Xie,
H.; Kong,
K.; Sereewit,
J.; Greninger,
A.; Englund,
J. A.
Submission details
Submission ID
PP776593.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-11 16:22:19 UTC
Date released
2024-12-11 16:40:50 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-11 16:22
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
University of Washington, Laboratory Medicine and Pathology
Alignment states and QC metrics
Completeness
99.90%
Length
15249
Total ambiguous nucs
4
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
25
Total SNPs
199
Total unknown nucs
11
Sample details
Collection country
USA
Collection subdivision level 1
Washington
Collection date
2024-02-29
Isolate name
WA-SCH-9354913
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PP776593.1
NCBI release date
2024-05-14
NCBI update date
2024-10-28
Clade & Lineage
Lineage
A.D.3.3
Nucleotide mutations
Substitutions
T
59
C
T
66
A
A
67
G
G
74
A
C
90
T
C
183
T
A
354
G
G
587
T
T
958
C
C
1012
T
G
1034
A
G
1050
A
G
1077
A
T
1137
C
T
1218
C
T
1326
C
T
1359
C
G
1368
A
Show more
Deletions
4174
Insertions
ins_15115:T, ins_0:CAACAAACTTGC, ins_3154:A, ins_15225:GTTTTTGACAC
Amino acid mutations
Substitutions
F
F:
T
12
I
F:
A
16
V
G
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
S
111
P
G:
T
113
I
G:
V
131
D
G:
I
134
K
G:
N
178
G
G:
K
204
N
G:
G
224
E
G:
P
234
S
G:
S
243
I
G:
N
251
K
G:
N
255
D
G:
H
258
Q
G:
K
262
E
G:
I
265
L
G:
H
266
L
Show more
L
L:
P
171
L
L:
R
256
K
L:
Y
598
H
L:
L
835
M
L:
I
1114
V
L:
L
1438
Q
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
L:
I
1834
V
N
N:
V
352
A
NS1
NS1:
G
2
D
P
P:
L
55
P
P:
T
92
M
Deletions
None
Insertions
None
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