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GS_000X4F5.1
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Display Name: GS_000X4F5.1/2024-02-29
Lauring,
A. S.; Papalambros,
L. K.
Submission details
Submission ID
PP781390.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-11 16:22:19 UTC
Date released
2024-12-11 16:40:50 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-11 16:22
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
University Of Michigan, Internal Medicine - Infectious Disease
INSDC
Bioproject accession
PRJNA1079770
INSDC accession
PP781390.1
NCBI release date
2024-05-18
NCBI update date
2024-05-18
Alignment states and QC metrics
Completeness
90.29%
Length
14430
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
2
Total SNPs
198
Total unknown nucs
683
Sample details
Collection country
USA
Collection date
2024-02-29
Isolate name
hRSV-A-G43S00U8
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.1.5
Nucleotide mutations
Substitutions
C
606
T
C
622
T
G
664
A
T
697
C
A
748
G
T
928
C
G
1000
A
C
1012
T
T
1019
C
T
1032
C
G
1045
A
T
1048
C
G
1050
A
T
1224
C
T
1359
C
G
1662
A
T
1668
C
T
1671
C
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Deletions
7555
Insertions
ins_3154:A, ins_2299:G
Amino acid mutations
Substitutions
F
F:
V
127
I
G
G:
A
57
T
G:
P
71
L
G:
H
90
Y
G:
S
100
N
G:
L
101
F
G:
I
134
K
G:
T
138
M
G:
L
142
S
G:
G
224
V
G:
S
243
I
G:
L
247
P
G:
K
262
E
G:
I
265
L
G:
Y
280
H
G:
D
284
G
G:
S
294
P
G:
Y
304
H
G:
T
319
I
G:
T
320
A
L
L:
P
171
L
L:
T
179
S
L:
R
256
K
L:
Y
598
H
L:
M
1225
I
L:
L
1438
Q
L:
I
1653
V
L:
K
1661
N
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
M
M:
M
43
I
M:
A
53
V
N
N:
V
352
A
NS2
NS2:
T
3
I
P
P:
L
55
P
Deletions
None
Insertions
None
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