Warning: Development or Keycloak main database is enabled. Development environment only.
X
GenSpectrum
RSV-A
Influenza A/H5N1
RSV-A
RSV B
Browse
Loculus
Browse
Docs
API docs
GS_000X4Z2.1
Download
Download FASTA
Download metadata TSV
Display Name: GS_000X4Z2.1/2024-02-29
Lauring,
A. S.; Papalambros,
L. K.
Submission details
Submission ID
PP781408.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-11 16:22:19 UTC
Date released
2024-12-11 16:40:50 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-11 16:22
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
University Of Michigan, Internal Medicine - Infectious Disease
INSDC
Bioproject accession
PRJNA1079770
INSDC accession
PP781408.1
NCBI release date
2024-05-18
NCBI update date
2024-05-18
Alignment states and QC metrics
Completeness
92.91%
Length
14639
Total ambiguous nucs
0
Total deleted nucs
4
Total frame shifts
0
Total inserted nucs
5
Total SNPs
219
Total unknown nucs
492
Sample details
Collection country
USA
Collection date
2024-02-29
Isolate name
hRSV-A-G43R97W3
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.5.1
Nucleotide mutations
Substitutions
T
697
C
A
940
C
A
1009
G
C
1012
T
A
1021
G
T
1028
C
G
1050
A
A
1051
C
A
1073
G
G
1079
A
T
1281
C
T
1359
C
T
1380
C
G
1383
A
T
1422
C
T
1443
C
G
1662
A
T
1756
C
Show more
Deletions
4592, 7516-7518
Insertions
ins_4104:AAAAC
Amino acid mutations
Substitutions
F
F:
T
122
A
G
G:
A
57
V
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
S
102
F
G:
T
118
I
G:
Q
127
L
G:
I
134
K
G:
P
206
Q
G:
K
209
R
G:
G
224
E
G:
S
243
I
G:
L
248
I
G:
K
253
Q
G:
K
262
E
G:
I
265
L
G:
G
272
S
G:
Y
273
H
Show more
L
L:
P
171
L
L:
M
194
I
L:
R
256
K
L:
Y
598
H
L:
L
1438
Q
L:
N
1723
G
L:
K
1727
E
L:
G
1731
D
L:
S
1745
L
L:
V
1943
D
M
M:
M
73
L
N
N:
Y
216
H
N:
V
352
A
P
P:
L
55
P
Deletions
None
Insertions
None
Load sequences