Warning: Development or Keycloak main database is enabled. Development environment only.
X
GenSpectrum
RSV-A
Influenza A/H5N1
RSV-A
RSV B
Browse
Loculus
Browse
Docs
API docs
GS_000XCA7.1
Download
Download FASTA
Download metadata TSV
Display Name: GS_000XCA7.1/2024-04-11
Lauring,
A. S.; Papalambros,
L. K.
Submission details
Submission ID
PP903833.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-11 16:22:19 UTC
Date released
2024-12-11 16:41:50 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-11 16:22
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
University Of Michigan, Internal Medicine - Infectious Disease
INSDC
Bioproject accession
PRJNA1079770
INSDC accession
PP903833.1
NCBI release date
2024-06-16
NCBI update date
2024-06-16
Alignment states and QC metrics
Completeness
87.91%
Length
14680
Total ambiguous nucs
0
Total deleted nucs
4
Total frame shifts
0
Total inserted nucs
1
Total SNPs
182
Total unknown nucs
1298
Sample details
Collection country
USA
Collection date
2024-04-11
Isolate name
hRSV-A-G43S23D7
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.5.2
Nucleotide mutations
Substitutions
C
516
T
G
1248
A
T
1254
C
T
1281
C
T
1359
C
G
1368
A
T
1380
C
T
1422
C
T
1443
C
C
1677
T
C
1788
T
C
1806
T
T
2064
C
T
2165
C
C
2368
T
A
2392
G
T
2481
C
C
2509
T
Show more
Deletions
4593, 7516-7518
Insertions
ins_4174:A
Amino acid mutations
Substitutions
F
F:
F
22
S
F:
A
103
T
F:
T
122
A
G
G:
A
57
V
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
I
134
K
G:
R
151
H
G:
P
206
Q
G:
K
209
R
G:
G
224
E
G:
T
235
I
G:
S
243
I
G:
L
248
I
G:
K
262
E
G:
I
265
L
G:
D
284
G
G:
G
296
S
G:
V
303
A
G:
Y
304
H
Show more
L
L:
R
256
K
L:
L
1438
Q
L:
N
1723
G
L:
E
1725
G
L:
G
1731
D
L:
V
1943
D
L:
T
2119
I
M
M:
M
73
L
M:
S
168
G
N
N:
V
352
A
P
P:
L
55
P
P:
T
69
I
Deletions
None
Insertions
None
Load sequences