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GS_000XEA5.1
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Display Name: GS_000XEA5.1/2024-03-11
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnker,
L.; Wang,
X.
Submission details
Submission ID
PP934458.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-11 16:22:19 UTC
Date released
2024-12-11 16:41:50 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-11 16:22
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN41877333
INSDC accession
PP934458.1
NCBI release date
2024-06-26
NCBI update date
2024-06-26
SRA run accession
SRR29436640
Alignment states and QC metrics
Completeness
90.33%
Length
15050
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
3
Total SNPs
183
Total unknown nucs
1294
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-03-11
Isolate name
MN-MDH-RSVA-00676
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.3.3
Nucleotide mutations
Substitutions
C
90
T
C
183
T
A
354
G
G
587
T
G
1034
A
G
1050
A
G
1077
A
T
1137
C
T
1218
C
T
1326
C
T
1359
C
G
1368
A
T
1413
A
T
1422
C
A
1599
C
C
1788
T
C
1806
T
T
2165
C
Show more
Deletions
None
Insertions
ins_15115:TT, ins_3154:A
Amino acid mutations
Substitutions
F
F:
T
12
I
F:
I
57
V
G
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
T
113
I
G:
V
131
D
G:
I
134
K
G:
N
178
G
G:
K
204
N
G:
G
224
E
G:
P
234
S
G:
S
243
I
G:
N
255
D
G:
H
258
Q
G:
Q
261
K
G:
K
262
E
G:
I
265
L
G:
H
266
L
G:
E
271
K
Show more
L
L:
S
141
F
L:
P
171
L
L:
R
256
K
L:
Y
598
H
L:
L
835
M
L:
I
1114
V
L:
L
1438
Q
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
N
N:
V
352
A
P
P:
T
92
M
Deletions
None
Insertions
None
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