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Influenza A/H5N1
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GS_000XEGT.1
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Display Name: GS_000XEGT.1/2024-03-18
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnker,
L.; Wang,
X.
Submission details
Submission ID
PP934464.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-11 16:22:19 UTC
Date released
2024-12-11 16:41:50 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-11 16:22
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN41877339
INSDC accession
PP934464.1
NCBI release date
2024-06-26
NCBI update date
2024-06-26
SRA run accession
SRR29436695
Alignment states and QC metrics
Completeness
92.43%
Length
14855
Total ambiguous nucs
0
Total deleted nucs
4
Total frame shifts
0
Total inserted nucs
0
Total SNPs
194
Total unknown nucs
786
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-03-18
Isolate name
MN-MDH-RSVA-00682
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.5.2
Nucleotide mutations
Substitutions
C
90
T
C
183
T
T
246
C
T
697
C
A
940
C
A
1009
G
C
1012
T
A
1021
G
T
1028
C
G
1050
A
A
1051
C
T
1359
C
G
1368
A
T
1380
C
T
1422
C
T
1443
C
C
1677
T
T
1776
A
Show more
Deletions
4592, 7516-7518
Insertions
None
Amino acid mutations
Substitutions
F
F:
A
103
T
F:
T
122
A
G
G:
A
57
V
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
S
121
R
G:
I
134
K
G:
P
206
Q
G:
K
209
R
G:
G
224
E
G:
T
235
I
G:
S
243
I
G:
L
248
I
G:
G
254
R
G:
I
265
L
G:
S
270
P
G:
D
284
G
G:
V
303
A
G:
Y
304
H
Show more
L
L:
P
171
L
L:
S
216
C
L:
R
256
K
L:
Y
598
H
L:
N
839
T
L:
L
1438
Q
L:
N
1723
G
L:
E
1725
G
L:
G
1731
D
L:
A
1927
T
L:
V
1943
D
L:
A
2014
T
L:
T
2069
A
M
M:
M
73
L
N
N:
V
352
A
P
P:
L
55
P
P:
T
69
I
Deletions
None
Insertions
None
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