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Influenza A/H5N1
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GS_000XFEW.1
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Display Name: GS_000XFEW.1/2024-03-22
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnker,
L.; Wang,
X.
Submission details
Submission ID
PP957764.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-11 16:22:19 UTC
Date released
2024-12-11 16:41:50 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-11 16:22
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN42036949
INSDC accession
PP957764.1
NCBI release date
2024-07-03
NCBI update date
2024-07-03
SRA run accession
SRR29541271
Alignment states and QC metrics
Completeness
95.36%
Length
15048
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
1
Total SNPs
202
Total unknown nucs
529
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-03-22
Isolate name
MN-MDH-RSVA-00751
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.3
Nucleotide mutations
Substitutions
C
90
T
C
183
T
A
357
G
T
468
A
A
563
G
G
587
T
C
589
T
C
686
T
G
1034
A
G
1049
A
G
1050
A
G
1077
A
A
1275
G
T
1359
C
G
1368
A
T
1413
A
T
1422
C
A
1602
G
Show more
Deletions
None
Insertions
ins_3154:A
Amino acid mutations
Substitutions
F
F:
T
12
I
F:
S
276
N
G
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
T
113
I
G:
V
131
D
G:
I
134
K
G:
N
178
G
G:
G
224
E
G:
P
230
T
G:
S
243
I
G:
H
258
Q
G:
K
262
E
G:
I
265
L
G:
H
266
L
G:
D
284
G
G:
P
298
L
G:
S
299
N
G:
S
301
T
L
L:
G
144
R
L:
P
171
L
L:
A
173
S
L:
R
256
K
L:
L
508
I
L:
Y
598
H
L:
L
835
M
L:
E
1190
D
L:
L
1438
Q
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
L:
K
2064
R
L:
V
2129
I
L:
Y
2163
C
N
N:
V
352
A
P
P:
L
55
P
P:
T
72
N
P:
T
92
M
SH
SH:
A
60
T
Deletions
None
Insertions
None
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