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Influenza A/H5N1
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GS_000XFT3.1
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Display Name: GS_000XFT3.1/2024-04-05
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnker,
L.; Wang,
X.
Submission details
Submission ID
PP957777.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-11 16:22:19 UTC
Date released
2024-12-11 16:41:50 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-11 16:22
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN42036962
INSDC accession
PP957777.1
NCBI release date
2024-07-03
NCBI update date
2024-07-03
SRA run accession
SRR29541257
Alignment states and QC metrics
Completeness
91.94%
Length
14859
Total ambiguous nucs
0
Total deleted nucs
5
Total frame shifts
0
Total inserted nucs
5
Total SNPs
224
Total unknown nucs
861
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-04-05
Isolate name
MN-MDH-RSVA-00764
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.5.1
Nucleotide mutations
Substitutions
C
90
T
C
183
T
T
497
C
T
697
C
T
1359
C
T
1380
C
G
1383
A
T
1422
C
T
1443
C
G
1662
A
T
1756
C
C
1788
T
C
1806
T
T
2165
C
T
2316
A
C
2362
T
A
2392
G
T
2481
C
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Deletions
3213, 4593, 7516-7518
Insertions
ins_4104:AAAAC
Amino acid mutations
Substitutions
F
F:
T
122
A
G
G:
A
57
V
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
T
118
I
G:
Q
127
L
G:
I
134
K
G:
S
144
N
G:
P
206
Q
G:
K
209
R
G:
G
224
K
G:
V
225
A
G:
S
243
I
G:
L
248
I
G:
K
253
Q
G:
K
262
E
G:
I
265
L
G:
G
272
S
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L
L:
P
171
L
L:
R
256
K
L:
Y
598
H
L:
R
1370
C
L:
L
1438
Q
L:
P
1720
L
L:
N
1723
G
L:
K
1727
E
L:
G
1731
D
L:
N
1916
Y
L:
V
1943
D
L:
Y
1974
H
M
M:
M
73
L
N
N:
Y
216
H
N:
V
352
A
P
P:
L
55
P
Deletions
None
Insertions
None
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