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GS_000XRZF.1
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Display Name: India/GS_000XRZF.1/2024-08-29
D. Tina,
C. N. Varun,
T. Surbhi,
S. Chandel,
N. Siddalingaiah,
P. Kumar,
L. Lodha,
U. Shruthi,
C. Pattabiraman &
R. S. Mani
Submission details
Submission ID
PQ780163.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-30 20:18:13 UTC
Date released
2025-06-30 20:32:12 UTC
Authors
Author affiliations
NIMHANS, Neurovirology
Clade & Lineage
Clade
3III_B.3.1
Alignment states and QC metrics
Completeness
99.57%
Length
10662
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
1
Total SNPs
461
Total unknown nucs
0
Sample details
Collection country
India
Collection date
2024-08-29
Isolate name
NIMH-2686_Z3_2024-08-29
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PQ780163.1
NCBI release date
2024-12-24
NCBI update date
2024-12-24
Nucleotide mutations
Mutations called relative to the
NC_001475.2
reference
Substitutions
G
65
A
G
112
A
C
203
T
T
235
C
G
241
T
T
250
C
C
256
T
A
265
G
C
289
T
T
295
C
C
334
T
C
358
T
C
383
A
A
460
G
T
496
A
T
556
C
G
565
A
T
604
C
Show more
Deletions
None
Insertions
ins_10436:A
Amino acid mutations
Mutations called relative to the
NC_001475.2
reference
Substitutions
2K
2K:
L
17
M
2K:
T
20
I
C
C:
Q
97
K
E
E:
V
139
I
E:
V
158
I
E:
A
219
T
E:
S
336
F
E:
E
404
A
NS1
NS1:
K
85
R
NS1:
L
94
I
NS1:
L
178
M
NS1:
T
233
S
NS1:
S
290
N
NS2A
NS2A:
L
23
M
NS2A:
V
127
I
NS2A:
V
150
I
NS2B
NS2B:
P
57
A
NS2B:
E
64
D
NS3
NS3:
F
31
L
NS3:
E
43
D
NS3:
T
112
M
NS3:
T
176
A
NS4A
NS4A:
D
36
H
NS4A:
E
46
D
NS4A:
L
63
S
NS4A:
V
100
I
NS4B
NS4B:
I
115
V
NS4B:
M
151
T
NS4B:
S
157
P
NS4B:
F
160
Y
NS5
NS5:
V
72
I
NS5:
T
188
A
NS5:
D
435
G
NS5:
I
553
T
NS5:
Q
562
L
NS5:
L
603
V
NS5:
T
629
S
NS5:
L
639
P
NS5:
E
820
D
NS5:
V
830
I
NS5:
P
864
S
Deletions
None
Insertions
None
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