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GS_000XUPY.1
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Display Name: GS_000XUPY.1/2024-02-26
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnker,
L.; Wang,
X.
Submission details
Submission ID
PP978523.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-11 16:22:19 UTC
Date released
2024-12-11 16:42:21 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-11 16:22
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN42232779
INSDC accession
PP978523.1
NCBI release date
2024-07-10
NCBI update date
2024-07-10
SRA run accession
SRR29680368
Alignment states and QC metrics
Completeness
98.78%
Length
15045
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
0
Total SNPs
221
Total unknown nucs
7
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-02-26
Isolate name
MN-MDH-RSVA-00912
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.1.6
Nucleotide mutations
Substitutions
C
90
T
C
183
T
G
198
A
A
303
T
C
360
T
A
399
G
T
497
C
G
551
A
G
555
A
G
664
A
T
697
C
G
747
A
G
755
A
G
1000
A
C
1012
T
T
1035
A
G
1050
A
T
1359
C
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Deletions
4175, 4592
Insertions
None
Amino acid mutations
Substitutions
F
F:
A
23
T
G
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
G
106
E
G:
P
120
L
G:
S
121
I
G:
I
134
K
G:
L
142
S
G:
P
143
S
G:
T
203
I
G:
P
217
S
G:
G
224
E
G:
K
240
N
G:
N
242
T
G:
S
243
I
G:
K
262
E
G:
I
265
L
G:
D
284
G
Show more
L
L:
N
143
D
L:
P
171
L
L:
T
179
S
L:
R
256
K
L:
Y
598
H
L:
M
1225
I
L:
L
1438
Q
L:
T
1489
N
L:
I
1653
V
L:
K
1661
N
L:
H
1690
Y
L:
N
1719
Y
L:
N
1723
S
L:
N
1724
D
L:
E
1725
G
L:
G
1731
D
L:
Y
2163
N
M
M:
M
43
I
N
N:
V
352
A
NS2
NS2:
R
50
K
NS2:
D
53
N
P
P:
L
55
P
SH
SH:
I
38
S
Deletions
None
Insertions
None
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