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GS_000XV34.1
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Display Name: GS_000XV34.1/2024-03-12
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnker,
L.; Wang,
X.
Submission details
Submission ID
PP978537.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-11 16:22:19 UTC
Date released
2024-12-11 16:42:51 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-11 16:22
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN42232793
INSDC accession
PP978537.1
NCBI release date
2024-07-10
NCBI update date
2024-07-10
SRA run accession
SRR29680352
Alignment states and QC metrics
Completeness
95.77%
Length
15045
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
0
Total SNPs
217
Total unknown nucs
466
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2024-03-12
Isolate name
MN-MDH-RSVA-00926
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.1.5
Nucleotide mutations
Substitutions
C
90
T
T
101
C
C
183
T
G
198
A
A
321
G
A
351
G
A
486
G
G
551
A
C
622
T
G
664
A
T
697
C
A
748
G
T
928
C
G
1000
A
C
1012
T
T
1019
C
A
1031
T
T
1032
C
Show more
Deletions
4592, 7555
Insertions
None
Amino acid mutations
Substitutions
F
F:
V
127
I
F:
S
377
N
F:
I
384
V
G
G:
A
57
T
G:
P
71
L
G:
I
76
V
G:
H
90
Y
G:
S
100
N
G:
L
101
F
G:
I
134
K
G:
L
142
S
G:
G
224
V
G:
S
243
I
G:
K
262
E
G:
I
265
L
G:
D
284
G
G:
E
286
K
G:
S
294
P
G:
Y
304
H
G:
T
319
I
G:
T
320
A
L
L:
N
143
D
L:
P
171
L
L:
T
179
S
L:
R
256
K
L:
Y
598
H
L:
M
1225
I
L:
L
1438
Q
L:
K
1467
N
L:
I
1653
V
L:
K
1661
N
L:
V
1721
I
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
M
M:
M
43
I
N
N:
V
352
A
NS1
NS1:
V
11
A
P
P:
L
55
P
Deletions
None
Insertions
None
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