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GS_000XVVK.1
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Display Name: GS_000XVVK.1/2024-03-11
Rothstein,
A. P.; Qiu,
X.; Collins,
S.; Muir,
G.; Simas,
A.; Sum,
A.; Lu,
B.; Cosca,
B.; Girinathan,
B.; Leeson,
P.; Phillipson,
C. W.; Plocik,
A.; Simen,
B.
Submission details
Submission ID
PQ117650.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-11 16:22:19 UTC
Date released
2024-12-11 16:42:51 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-11 16:22
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity
Alignment states and QC metrics
Completeness
99.81%
Length
15218
Total ambiguous nucs
0
Total deleted nucs
6
Total frame shifts
0
Total inserted nucs
28
Total SNPs
207
Total unknown nucs
0
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2024-03-11
Isolate name
H20-360-0626
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PQ117650.1
NCBI release date
2024-08-07
NCBI update date
2024-08-07
Clade & Lineage
Lineage
A.D.3
Nucleotide mutations
Substitutions
T
59
C
T
66
A
A
67
G
G
74
A
C
90
T
C
165
T
C
183
T
T
195
C
T
231
C
A
342
G
C
411
T
T
454
C
A
562
C
G
587
T
T
619
C
C
1012
T
G
1034
A
G
1050
A
Show more
Deletions
4592, 15096-15100
Insertions
ins_15115:TT, ins_3150:T, ins_15225:GTTTTTGACACTTTTTTTC, ins_15053:CAAAAA
Amino acid mutations
Substitutions
F
F:
T
12
I
G
G:
H
67
N
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
G
106
R
G:
T
113
I
G:
V
131
D
G:
I
134
K
G:
N
178
G
G:
K
209
N
G:
K
221
R
G:
G
224
E
G:
S
243
I
G:
H
258
Q
G:
K
262
E
G:
I
265
L
G:
H
266
L
G:
P
274
L
Show more
L
L:
P
171
L
L:
R
256
K
L:
Y
598
H
L:
L
835
M
L:
L
1438
Q
L:
D
1644
E
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
L:
L
2058
F
N
N:
V
352
A
NS1
NS1:
G
2
D
P
P:
L
55
P
P:
T
92
M
Deletions
None
Insertions
None
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