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GS_000XXK3.1
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Display Name: India/GS_000XXK3.1/2024-08-30
P. Singh,
S. Negi,
K. Sharma,
R. Khare &
A. Bhargava
Submission details
Submission ID
PV554919.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-30 20:18:13 UTC
Date released
2025-06-30 20:32:42 UTC
Authors
Author affiliations
Department of Microbiology, All India Institute of Medical Sciences, State Virus Research and Diagnostic Laboratory (VRDL)
Clade & Lineage
Clade
3III_A
Alignment states and QC metrics
Completeness
97.89%
Length
10482
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
1
Total SNPs
226
Total unknown nucs
0
Sample details
Collection country
India
Collection date
2024-08-30
Isolate name
AIIMSR-DEN-49/2024
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PV554919.1
NCBI release date
2025-04-29
NCBI update date
2025-04-29
Nucleotide mutations
Mutations called relative to the
NC_001475.2
reference
Substitutions
G
65
A
G
112
A
C
203
T
C
334
T
C
343
T
C
358
T
C
383
A
T
406
C
T
556
C
G
565
A
G
976
C
A
979
G
A
1264
G
G
1300
T
A
1306
G
G
1321
A
G
1349
A
G
1384
A
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Deletions
None
Insertions
ins_10436:A
Amino acid mutations
Mutations called relative to the
NC_001475.2
reference
Substitutions
2K
2K:
L
17
M
2K:
T
20
I
C
C:
Q
97
K
E
E:
V
139
I
E:
V
158
I
E:
E
404
A
NS1
NS1:
L
178
M
NS1:
T
233
S
NS2A
NS2A:
V
127
I
NS2A:
V
150
I
NS3
NS3:
T
112
M
NS3:
T
176
A
NS4A
NS4A:
D
36
H
NS4A:
V
100
I
NS4B
NS4B:
M
151
I
NS4B:
S
157
P
NS4B:
F
160
Y
NS4B:
V
175
I
NS5
NS5:
V
72
I
NS5:
I
553
T
NS5:
Q
562
L
NS5:
T
629
S
NS5:
E
820
D
NS5:
V
830
I
Deletions
None
Insertions
None
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