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GS_00117GS.1
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Display Name: USA/GS_00117GS.1/2025-01-26
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnkers-Voels,
L.; Strain,
A.
Submission details
Submission ID
PV211737.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-23 05:02:41 UTC
Date released
2025-04-23 05:14:26 UTC
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN47201284
INSDC accession
PV211737.1
NCBI release date
2025-03-10
NCBI update date
2025-03-10
SRA run accession
SRR32557039
Alignment states and QC metrics
Completeness
96.91%
Length
15139
Total ambiguous nucs
1
Total deleted nucs
3
Total frame shifts
0
Total inserted nucs
4
Total SNPs
137
Total unknown nucs
386
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-01-26
Isolate name
MN-MDH-RSVB-02022
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
B.D.E.1
Nucleotide mutations
Substitutions
G
458
C
G
513
T
G
579
A
C
598
T
T
670
C
C
874
T
C
998
T
G
1385
A
G
1732
A
G
1768
A
T
1846
C
C
1927
T
C
2074
T
C
2198
T
C
2554
T
C
2691
T
A
2925
T
G
3036
C
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Deletions
973, 4586, 5580
Insertions
ins_15092:ATAT
Amino acid mutations
Substitutions
F
F:
F
12
I
F:
S
190
N
F:
S
211
N
F:
S
389
P
G
G:
A
74
V
G:
K
85
E
G:
S
100
G
G:
T
113
A
G:
P
214
S
G:
P
221
L
G:
I
252
T
G:
S
265
P
G:
I
268
T
G:
S
275
P
G:
Y
285
H
L
L:
S
169
P
L:
C
195
Y
L:
K
570
R
L:
S
1239
N
L:
R
1759
K
L:
T
1987
I
N
N:
V
97
I
Deletions
None
Insertions
None
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