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GS_00120W2.1

Display Name: Cuba/GS_00120W2.1/2022-09-01
J. Navero-Castillejos, M. Navarro & M. J. Martinez-Yoldi

Submission details

Submission ID
OR875948.1
Submitting group
Date submitted
2025-12-11 14:52:19 UTC
Date released
2025-12-11 15:01:17 UTC

Authors

Author affiliations
ISGlobal-Clinical and Provincial Hospital of Barcelona, Department of Microbiology

Clade & Lineage

Clade
3III_B.3.2

Alignment states and QC metrics

Completeness
13.80%
Frame shifts
[]
Length
1479
Total ambiguous nucs
1
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
63
Total unknown nucs
0

Sample details

Collection country
Cuba
Collection date
2022-09-01
Isolate name
HCBD3078

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2023-12-04
NCBI update date
2023-12-04

Nucleotide mutations

Mutations called relative to the NC_001475.2 reference

Substitutions

  • A952G
  • C958T
  • G970A
  • G976T
  • A979G
  • C1009A
  • T1030C
  • T1216C
  • C1228T
  • T1234C
  • A1264G
  • A1306G
  • G1321A
  • A1402G
  • G1406A
  • G1411A
  • A1423G
  • T1426C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_001475.2 reference

    Substitutions

    E

  • E:V158I
  • E:A219T
  • E:K325R
  • E:I380T
  • E:E404A
    • Deletions
    None
    Insertions
    None