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GS_001ASYQ.1
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Display Name: USA/GS_001ASYQ.1/2024-11-03
M. Mitchell,
Y. Dong,
O. Tekin &
Y. Huang
Submission details
Submission ID
PX395844.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-10-08 14:09:54 UTC
Date released
2025-10-08 14:38:43 UTC
Authors
Author affiliations
FLDOH, BPHL
INSDC
Bioproject accession
PRJNA973096
Biosample accession
SAMN51637474
INSDC accession
PX395844.1
NCBI release date
2025-09-24
NCBI update date
2025-09-24
SRA run accession
SRR35515527
Clade & Lineage
Clade
2III_D.2.2
Alignment states and QC metrics
Completeness
98.51%
Length
10564
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
1
Total SNPs
804
Total unknown nucs
0
Sample details
Collection country
USA
Collection subdivision level 1
FL
Collection date
2024-11-03
Isolate name
DENV-2/USA/FL-BPHL-0198/2024
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Nucleotide mutations
Mutations called relative to the
NC_001474.2
reference
Substitutions
G
111
A
A
122
G
C
126
T
A
146
G
G
168
A
C
208
T
G
213
A
A
219
C
A
228
G
G
246
T
A
267
G
T
292
C
G
294
A
G
297
A
A
309
G
T
312
C
T
330
C
T
384
C
Show more
Deletions
None
Insertions
ins_10392:A
Amino acid mutations
Mutations called relative to the
NC_001474.2
reference
Substitutions
C
C:
K
9
R
C:
K
17
R
C:
S
101
T
C:
M
104
V
C:
V
112
A
E
E:
M
6
I
E:
V
91
I
E:
R
120
T
E:
V
129
I
E:
I
170
T
E:
E
174
D
E:
N
203
D
E:
T
239
V
E:
V
308
I
E:
V
324
I
E:
M
340
T
E:
K
361
R
E:
I
462
V
E:
T
478
S
E:
I
484
V
E:
V
491
A
NS1
NS1:
I
93
T
NS1:
K
172
R
NS1:
V
177
A
NS1:
A
196
V
NS1:
I
212
M
NS1:
N
222
S
NS1:
L
247
F
NS1:
I
264
T
NS1:
T
265
A
NS1:
D
281
E
NS2A
NS2A:
H
2
L
NS2A:
V
5
I
NS2A:
V
36
I
NS2A:
T
104
A
NS2A:
V
109
T
NS2A:
M
136
I
NS2A:
L
153
T
NS2A:
Q
162
R
NS2A:
V
174
A
NS2A:
T
189
A
NS2B
NS2B:
L
109
V
NS3
NS3:
M
13
V
NS3:
K
28
R
NS3:
K
61
R
NS3:
L
115
I
NS3:
A
120
T
NS3:
I
140
V
NS3:
K
142
R
NS3:
R
186
K
NS3:
R
248
K
NS3:
I
333
M
NS3:
T
399
A
NS3:
R
549
K
NS3:
R
561
K
NS3:
V
567
I
NS4A
NS4A:
D
23
N
NS4A:
R
76
K
NS4B
NS4B:
A
19
T
NS4B:
Q
22
E
NS4B:
E
24
D
NS4B:
F
112
L
NS4B:
A
137
T
NS4B:
D
156
E
NS4B:
P
157
T
NS4B:
V
175
I
NS5
NS5:
I
135
T
NS5:
V
156
I
NS5:
A
196
T
NS5:
S
225
T
NS5:
R
246
K
NS5:
Y
247
H
NS5:
I
277
V
NS5:
K
375
R
NS5:
I
412
V
NS5:
S
429
G
NS5:
E
501
G
NS5:
K
514
R
NS5:
S
523
G
NS5:
E
558
K
NS5:
H
561
Q
NS5:
V
628
I
NS5:
I
637
A
NS5:
L
670
I
Show more
prM
prM:
S
15
G
prM:
M
39
I
prM:
M
83
T
prM:
M
135
I
prM:
T
162
A
Deletions
None
Insertions
None
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