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GenSpectrum
Influenza A/H5N1
Influenza A/H5N1
RSV-A
RSV B
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GS_001DYBM.1
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Display Name: GS_001DYBM.1/2024-10-18
Kirby,
M. K.; Steel,
J.; Garten,
R.; Davis,
T.; Dugan,
V.; DaSilva,
J.; Liddell,
J.; Frederick,
J. C.; Di,
H.; Sheffield,
S.; Radford,
K.; De La Cruz,
J.; Keong,
L.; Jang,
Y.; Shu,
B.; Schatzman,
S.; Nguyen,
H.; Murray,
T.; Dang,
T.; Hiatt,
B.
Submission details
Submission ID
PQ573555.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-11 16:47:38 UTC
Date released
2024-12-11 17:24:58 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-11 16:48
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Centers for Disease Control and Prevention, WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division
INSDC
Bioproject accession
PRJNA1095491
INSDC accession seg6
PQ573555.1
NCBI release date
2024-11-08
Alignment states and QC metrics seg6
Completeness seg6
98.29%
Length seg6
1433
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
212
Total unknown nucs seg6
0
Sample details
Collection country
USA
Collection subdivision level 1
Washington
Collection date
2024-10-18
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Nucleotide mutations
Substitutions
seg6
seg6:
A
15
T
seg6:
T
17
C
seg6:
G
35
A
seg6:
C
47
T
seg6:
T
50
C
seg6:
A
53
G
seg6:
T
62
C
seg6:
G
69
A
seg6:
G
74
A
seg6:
T
80
A
seg6:
C
83
T
seg6:
T
84
C
seg6:
A
87
G
seg6:
T
90
C
seg6:
G
101
A
seg6:
C
122
T
seg6:
G
137
A
seg6:
A
140
T
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Deletions
None
Insertions
None
Amino acid mutations
Substitutions
NA
NA:
V
17
I
NA:
M
23
V
NA:
H
44
N
NA:
Q
45
H
NA:
A
46
P
NA:
P
48
T
NA:
I
53
V
NA:
V
67
I
NA:
F
74
L
NA:
L
75
I
NA:
T
76
A
NA:
K
78
Q
NA:
A
81
D
NA:
S
82
P
NA:
T
84
A
NA:
V
99
I
NA:
H
100
Y
NA:
H
155
Y
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Deletions
None
Insertions
None
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