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GS_001EALN.1

Display Name: GS_001EALN.1/2024-10-18
Kirby, M. K.; Steel, J.; Garten, R.; Davis, T.; Dugan, V.; DaSilva, J.; Liddell, J.; Frederick, J. C.; Di, H.; Sheffield, S.; Radford, K.; De La Cruz, J.; Keong, L.; Jang, Y.; Shu, B.; Schatzman, S.; Nguyen, H.; Murray, T.; Dang, T.; Hiatt, B.

Submission details

Submission ID
PQ573558.1.seg7
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-11 16:47:38 UTC
Date released
2024-12-11 17:24:58 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-11 16:48insdc_ingest_userOPEN

Authors

Author affiliations
Centers for Disease Control and Prevention, WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division

INSDC

Bioproject accession
PRJNA1095491
INSDC accession seg7
PQ573558.1
NCBI release date
2024-11-08

Alignment states and QC metrics seg7

Completeness seg7
97.57%
Length seg7
1002
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
0
Total SNPs seg7
57
Total unknown nucs seg7
0

Sample details

Collection country
USA
Collection subdivision level 1
Washington
Collection date
2024-10-18

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Nucleotide mutations

Substitutions

seg7

  • seg7:A25G
  • seg7:A76G
  • seg7:C142T
  • seg7:A196G
  • seg7:A205G
  • seg7:G268A
  • seg7:C274T
  • seg7:T275C
  • seg7:T292C
  • seg7:T301C
  • seg7:T307C
  • seg7:T316C
  • seg7:G319A
  • seg7:A322G
  • seg7:A327G
  • seg7:G331A
  • seg7:C332T
  • seg7:A337G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    M2

  • M2:E14G
  • M2:K18N
  • M2:V28I
  • M2:I51V
    • Deletions
    None
    Insertions
    None