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GS_001EANJ.1

Display Name: GS_001EANJ.1/2024-10-18
Kirby, M. K.; Steel, J.; Garten, R.; Davis, T.; Dugan, V.; DaSilva, J.; Liddell, J.; Frederick, J. C.; Di, H.; Sheffield, S.; Radford, K.; De La Cruz, J.; Keong, L.; Jang, Y.; Shu, B.; Schatzman, S.; Nguyen, H.; Murray, T.; Dang, T.; Hiatt, B.

Submission details

Submission ID
PQ573560.1.seg2
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-11 16:47:38 UTC
Date released
2024-12-11 17:24:58 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-11 16:48insdc_ingest_userOPEN

Authors

Author affiliations
Centers for Disease Control and Prevention, WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division

INSDC

Bioproject accession
PRJNA1095491
INSDC accession seg2
PQ573560.1
NCBI release date
2024-11-08

Alignment states and QC metrics seg2

Completeness seg2
98.89%
Length seg2
2316
Total ambiguous nucs seg2
1
Total deleted nucs seg2
0
Total frame shifts seg2
0
Total inserted nucs seg2
0
Total SNPs seg2
213
Total unknown nucs seg2
0

Sample details

Collection country
USA
Collection subdivision level 1
Washington
Collection date
2024-10-18

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Nucleotide mutations

Substitutions

seg2

  • seg2:A70G
  • seg2:T75C
  • seg2:T96C
  • seg2:T108A
  • seg2:A129G
  • seg2:C141A
  • seg2:T171C
  • seg2:A177G
  • seg2:G183A
  • seg2:G195A
  • seg2:G204A
  • seg2:T207C
  • seg2:C216T
  • seg2:T225C
  • seg2:G228A
  • seg2:A237G
  • seg2:T252C
  • seg2:T255C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    PB1

  • PB1:N16D
  • PB1:K134N
  • PB1:G154S
  • PB1:E172D
  • PB1:G177E
  • PB1:I182T
  • PB1:K207R
  • PB1:S375N
  • PB1:E390G
  • PB1:R430K
  • PB1:E460Q
  • PB1:T478S
  • PB1:C490F
  • PB1:M535I
  • PB1:D536N
  • PB1:P558T
  • PB1:I568L
  • PB1:P598L
    • Deletions
    None
    Insertions
    None