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Influenza A/H5N1
Influenza A/H5N1
RSV-A
RSV B
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GS_001EAQE.1
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Display Name: GS_001EAQE.1/2024-10-18
Kirby,
M. K.; Steel,
J.; Garten,
R.; Davis,
T.; Dugan,
V.; DaSilva,
J.; Liddell,
J.; Frederick,
J. C.; Di,
H.; Sheffield,
S.; Radford,
K.; De La Cruz,
J.; Keong,
L.; Jang,
Y.; Shu,
B.; Schatzman,
S.; Nguyen,
H.; Murray,
T.; Dang,
T.; Hiatt,
B.
Submission details
Submission ID
PQ573562.1.seg4
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-11 16:47:38 UTC
Date released
2024-12-11 17:24:58 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-12-11 16:48
insdc_ingest_user
OPEN
Close
(history)
Authors
Author affiliations
Centers for Disease Control and Prevention, WHO Collaborating Center for Surveillance, Epidemiology and Control of Influenza, Influenza Division
INSDC
Bioproject accession
PRJNA1095491
INSDC accession seg4
PQ573562.1
NCBI release date
2024-11-08
Clade
Clade
2.3.4.4b
Alignment states and QC metrics seg4
Completeness seg4
99.66%
Length seg4
1751
Total ambiguous nucs seg4
0
Total deleted nucs seg4
3
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
176
Total unknown nucs seg4
0
Sample details
Collection country
USA
Collection subdivision level 1
Washington
Collection date
2024-10-18
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Nucleotide mutations
Substitutions
seg4
seg4:
A
9
T
seg4:
T
10
C
seg4:
A
12
C
seg4:
G
27
A
seg4:
A
30
C
seg4:
G
36
A
seg4:
G
52
A
seg4:
C
54
T
seg4:
T
57
C
seg4:
C
63
T
seg4:
C
102
T
seg4:
A
123
G
seg4:
T
141
C
seg4:
T
144
C
seg4:
G
174
A
seg4:
A
175
G
seg4:
T
183
C
seg4:
C
195
T
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Deletions
seg4:1054-1056
Insertions
None
Amino acid mutations
Substitutions
HA
HA:
K
3
N
HA:
V
11
I
HA:
T
52
A
HA:
R
69
K
HA:
N
88
R
HA:
K
98
R
HA:
S
100
N
HA:
D
110
S
HA:
F
111
L
HA:
T
124
I
HA:
Q
131
L
HA:
S
139
P
HA:
D
142
E
HA:
A
143
T
HA:
S
145
L
HA:
S
149
A
HA:
H
154
Q
HA:
R
156
A
Show more
Deletions
HA:344
Insertions
None
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