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GS_001HJYH.1

Display Name: USA/GS_001HJYH.1/2025-01-29
Steel, J.; Kirby, M.; Garten, R.; Davis, T.; Dugan, V.

Submission details

Submission ID
PV346792.1.seg4
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-03 07:40:11 UTC
Date released
2025-04-03 08:01:42 UTC

Authors

Author affiliations
Centers for Disease Control and Prevention, Influenza Division

INSDC

Bioproject accession
PRJNA998882
INSDC accession seg4
PV346792.1
NCBI release date
2025-03-20

Clade

Clade HA
V1A.3a.2

Alignment states and QC metrics seg4

Completeness seg4
98.46%
Length seg4
1847
Total ambiguous nucs seg4
0
Total deleted nucs seg4
9
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
53
Total unknown nucs seg4
0

Sample details

Collection country
USA
Collection subdivision level 1
Rhode Island
Collection date
2025-01-29
Isolate name
EPI_ISL_19770802

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC seg4

Lineage seg4
vic

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg4

  • seg4:C126T
  • seg4:C188T
  • seg4:C252A
  • seg4:G267A
  • seg4:C270T
  • seg4:G297A
  • seg4:G312T
  • seg4:A318G
  • seg4:A351G
  • seg4:C375T
  • seg4:C378T
  • seg4:A427G
  • seg4:C441T
  • seg4:T444C
  • seg4:G457A
  • seg4:G460A
  • seg4:A463G
  • seg4:A484G
    • Deletions
    seg4:562-570
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

    Substitutions

    HA1

  • HA1:T37I
  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:E183K
  • HA1:G184E
  • HA1:N197E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K
    • Deletions
    HA1:162-164
    Insertions
    None