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GS_001JEL9.1

Display Name: China/GS_001JEL9.1/2010-06-01
W. Su

Submission details

Submission ID
CY109092.1.seg4/CY109093.1.seg6
Submitting group
Date submitted
2025-12-11 14:53:52 UTC
Date released
2025-12-11 14:56:15 UTC

Authors

Author affiliations
Center for Disease Control and Prevention, Microbiology

Clade

Clade HA
V1A
Clade NA
A

Alignment states and QC metrics seg4

Completeness seg4
37.08%
Frame shifts seg4
[]
Length seg4
699
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
7
Total unknown nucs seg4
0

Alignment states and QC metrics seg6

Completeness seg6
96.36%
Frame shifts seg6
[]
Length seg6
1350
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
10
Total unknown nucs seg6
0

Sample details

Collection country
China
Collection subdivision level 1
Guangdong
Collection date
2010-06-01

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession seg4
INSDC accession seg6
NCBI release date
2012-02-14

INSDC seg4

Lineage seg4
vic

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg4

  • seg4:G228A
  • seg4:T251C
  • seg4:G432A
  • seg4:C441T
  • seg4:A514G
  • seg4:C666T
  • seg4:G673A

    • seg6

  • seg6:C80T
  • seg6:C151T
  • seg6:C217T
  • seg6:A595G
  • seg6:C803T
  • seg6:A985G
  • seg6:C987T
  • seg6:G1047A
  • seg6:A1113G
  • seg6:T1383C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

    Substitutions

    HA1

  • HA1:L58P
  • HA1:I146V
  • HA1:A199T

    • NA

  • NA:S27L
  • NA:P51S
  • NA:L73F
  • NA:N199D
  • NA:T268I
  • NA:N329D
    • Deletions
    None
    Insertions
    None