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GS_001V7X6.1
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Display Name: USA/GS_001V7X6.1/2024-11-15
E. B. Fox,
J. M. Garrigues &
N. M. Green
Submission details
Submission ID
PV001655.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-30 20:19:11 UTC
Date released
2025-06-30 20:55:30 UTC
Authors
Author affiliations
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Clade & Lineage
Clade
2II_F.1.1
Alignment states and QC metrics
Completeness
98.79%
Length
10606
Total ambiguous nucs
13
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
810
Total unknown nucs
0
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2024-11-15
Isolate name
hDenV2/USA/CA-LACPHL-DA00050/2024
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PV001655.1
NCBI release date
2025-01-28
NCBI update date
2025-01-28
Nucleotide mutations
Mutations called relative to the
NC_001474.2
reference
Substitutions
G
44
A
C
54
T
A
122
G
C
126
T
G
168
A
A
177
G
G
210
A
T
226
C
A
228
G
G
252
A
A
276
G
G
294
A
G
297
A
T
312
C
A
324
G
T
330
C
T
336
C
G
372
T
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Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_001474.2
reference
Substitutions
C
C:
K
9
R
C:
S
101
T
C:
M
104
I
C:
L
108
M
E
E:
M
6
I
E:
Q
52
H
E:
E
71
A
E:
R
120
T
E:
V
129
I
E:
H
149
N
E:
I
164
V
E:
I
322
V
E:
N
390
S
E:
I
462
V
E:
T
478
S
E:
I
484
V
NS1
NS1:
S
80
T
NS1:
L
86
I
NS1:
T
117
A
NS1:
S
128
L
NS1:
Q
131
H
NS1:
K
174
R
NS1:
F
178
S
NS1:
N
222
S
NS1:
L
247
F
NS1:
I
264
T
NS1:
T
265
A
NS1:
K
272
R
NS1:
D
281
E
NS2A
NS2A:
V
5
I
NS2A:
K
82
R
NS2A:
A
89
T
NS2A:
M
136
I
NS2A:
I
171
A
NS2B
NS2B:
L
21
F
NS2B:
V
59
I
NS2B:
K
60
R
NS2B:
D
63
E
NS2B:
T
77
A
NS3
NS3:
M
13
V
NS3:
K
15
R
NS3:
A
120
T
NS3:
I
140
V
NS3:
A
160
T
NS3:
R
186
K
NS3:
V
273
I
NS3:
I
333
M
NS3:
V
395
I
NS3:
I
461
V
NS4A
NS4A:
D
23
N
NS4A:
R
39
K
NS4A:
V
64
I
NS4A:
R
76
K
NS4A:
I
89
V
NS4B
NS4B:
A
19
T
NS4B:
V
48
I
NS4B:
F
112
L
NS4B:
T
244
A
NS5
NS5:
I
5
T
NS5:
S
15
N
NS5:
M
70
L
NS5:
R
98
K
NS5:
I
135
T
NS5:
Y
201
H
NS5:
Y
247
H
NS5:
I
271
T
NS5:
V
335
I
NS5:
I
376
V
NS5:
R
430
G
NS5:
K
570
R
NS5:
G
605
V
NS5:
I
637
A
NS5:
Q
644
K
NS5:
A
648
V
NS5:
S
676
N
NS5:
I
687
V
NS5:
K
800
T
NS5:
A
865
T
prM
prM:
D
29
N
prM:
K
52
N
prM:
T
82
A
prM:
M
83
T
prM:
V
120
A
prM:
I
127
V
prM:
M
135
I
prM:
A
152
V
prM:
T
162
A
Deletions
None
Insertions
None
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