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GS_001VG6E.1

Display Name: India/GS_001VG6E.1/2024-10-01
P. Singh, S. Negi, K. Sharma, R. Khare & A. Bhargava

Submission details

Submission ID
PV554918.1
Submitting group
Date submitted
2025-06-30 20:19:11 UTC
Date released
2025-06-30 20:55:30 UTC

Authors

Author affiliations
Department of Microbiology, All India Institute of Medical Sciences, State Virus Research and Diagnostic Laboratory (VRDL)

Clade & Lineage

Clade
2V

Alignment states and QC metrics

Completeness
98.03%
Length
10512
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
345
Total unknown nucs
0

Sample details

Collection country
India
Collection date
2024-10-01
Isolate name
AIIMSR-DEN-41/2024

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2025-04-29
NCBI update date
2025-04-29

Nucleotide mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

  • G44A
  • C54T
  • A122G
  • C126T
  • G168A
  • A177G
  • G210A
  • T226C
  • A228G
  • G252A
  • C450T
  • T456C
  • C459T
  • C483T
  • T795C
  • T797C
  • C798A
  • A817G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_001474.2 reference

    Substitutions

    C

  • C:K9R

    • E

  • E:M6I
  • E:N390S
  • E:I462V

    • NS1

  • NS1:S80T
  • NS1:I264T
  • NS1:T265A
  • NS1:K272R

    • NS2B

  • NS2B:L21F

    • NS3

  • NS3:I140V
  • NS3:R186K
  • NS3:I461V
  • NS3:I600V

    • NS4A

  • NS4A:D23N

    • NS4B

  • NS4B:F112L
  • NS4B:T244A

    • NS5

  • NS5:I5T
  • NS5:S15N
  • NS5:M70L
  • NS5:R98K
  • NS5:I135T
  • NS5:Y201H
  • NS5:V335I
  • NS5:H513Y
  • NS5:G605V
  • NS5:I637A
  • NS5:Q644K
  • NS5:A648V
  • NS5:S676N
  • NS5:I687V
  • NS5:K800T
  • NS5:A865T

    • prM

  • prM:V120A
  • prM:I127V
  • prM:M135I
  • prM:A152V
  • prM:T162A
    • Deletions
    None
    Insertions
    None