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GS_001VGC2.1

Display Name: India/GS_001VGC2.1/2024-11-21
P. Singh, S. Negi, K. Sharma, R. Khare & A. Bhargava

Submission details

Submission ID
PV554931.1
Submitting group
Date submitted
2025-06-30 20:19:11 UTC
Date released
2025-06-30 20:56:01 UTC

Authors

Author affiliations
Department of Microbiology, All India Institute of Medical Sciences, State Virus Research and Diagnostic Laboratory (VRDL)

Clade & Lineage

Clade
2V

Alignment states and QC metrics

Completeness
98.95%
Length
10610
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
44
Total unknown nucs
0

Sample details

Collection country
India
Collection date
2024-11-21
Isolate name
AIIMSR-DEN-90/2024

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2025-04-29
NCBI update date
2025-04-29

Nucleotide mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

  • G44A
  • C54T
  • A122G
  • C126T
  • G168A
  • A177G
  • G210A
  • T226C
  • A228G
  • G252A
  • T456C
  • C459T
  • G2085A
  • A2105G
  • T2124C
  • C2130T
  • G2157A
  • G2160A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_001474.2 reference

    Substitutions

    C

  • C:K9R

    • E

  • E:N390S

    • NS2A

  • NS2A:V5I
    • Deletions
    None
    Insertions
    None