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GS_00236R3.1
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Display Name: USA/GS_00236R3.1/2024-08-14
M. Mitchell,
O. Tekin &
Y. Dong
Submission details
Submission ID
PQ617112.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-30 20:19:15 UTC
Date released
2025-06-30 20:57:03 UTC
Authors
Author affiliations
FLDOH, BPHL
INSDC
Bioproject accession
PRJNA973096
Biosample accession
SAMN44818312
INSDC accession
PQ617112.1
NCBI release date
2024-11-24
NCBI update date
2024-11-24
SRA run accession
SRR31395620
Clade & Lineage
Clade
1V_E.2
Alignment states and QC metrics
Completeness
97.67%
Length
10606
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
877
Total unknown nucs
121
Sample details
Collection country
USA
Collection subdivision level 1
FL
Collection date
2024-08-14
Isolate name
DENV-1/USA/FL-BPHL-0131/2024
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Nucleotide mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
A
76
G
T
171
G
T
203
C
T
244
C
C
253
T
T
274
C
G
302
A
G
325
A
G
340
A
G
349
A
A
355
G
A
363
G
T
368
C
C
382
T
T
397
C
C
430
T
C
439
T
C
443
T
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
C
C:
V
26
G
C:
G
70
S
C:
N
90
S
E
E:
D
37
N
E:
V
55
I
E:
T
88
A
E:
I
114
L
E:
T
160
I
E:
T
161
I
E:
A
180
S
E:
K
203
E
E:
I
293
T
E:
S
339
T
E:
A
369
T
E:
K
394
R
E:
I
436
V
E:
I
439
V
E:
I
461
V
NS1
NS1:
V
93
A
NS1:
S
94
N
NS1:
V
128
I
NS1:
N
139
D
NS1:
N
146
G
NS1:
I
162
V
NS1:
V
178
M
NS1:
I
224
T
NS1:
T
307
I
NS1:
K
324
R
NS1:
K
347
R
NS2A
NS2A:
L
12
I
NS2A:
I
15
V
NS2A:
T
44
I
NS2A:
K
67
R
NS2A:
R
82
K
NS2A:
M
83
V
NS2A:
V
106
I
NS2A:
D
139
E
NS2A:
S
142
P
NS2A:
A
147
T
NS2A:
F
159
L
NS2A:
H
162
D
NS2A:
M
168
T
NS2A:
I
171
A
NS2A:
L
199
F
NS2B
NS2B:
V
11
I
NS2B:
E
63
Q
NS2B:
N
73
S
NS2B:
I
106
V
NS3
NS3:
D
20
N
NS3:
E
43
D
NS3:
A
91
T
NS3:
A
112
T
NS3:
R
185
K
NS3:
V
221
I
NS3:
I
241
V
NS3:
K
255
R
NS3:
V
323
M
NS3:
R
338
K
NS3:
V
384
I
NS3:
I
474
V
NS4A
NS4A:
Q
19
L
NS4A:
R
76
K
NS4A:
I
89
T
NS4A:
S
99
G
NS4B
NS4B:
H
17
Y
NS4B:
H
24
Q
NS4B:
A
27
T
NS4B:
I
48
V
NS5
NS5:
I
34
M
NS5:
K
76
R
NS5:
Y
127
H
NS5:
T
135
M
NS5:
Q
195
R
NS5:
K
364
R
NS5:
A
370
T
NS5:
R
378
K
NS5:
A
616
V
NS5:
S
629
L
NS5:
P
636
S
NS5:
V
642
A
NS5:
K
647
G
NS5:
T
651
A
NS5:
K
697
R
NS5:
D
834
E
NS5:
F
881
Y
NS5:
P
894
S
prM
prM:
T
59
A
prM:
E
72
D
prM:
D
89
E
prM:
K
122
R
Deletions
None
Insertions
None
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