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GS_0023KUJ.1
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Display Name: India/GS_0023KUJ.1/2024-09-13
P. Singh,
S. Negi,
K. Sharma,
R. Khare &
A. Bhargava
Submission details
Submission ID
PV554923.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-30 20:19:15 UTC
Date released
2025-06-30 20:58:34 UTC
Authors
Author affiliations
Department of Microbiology, All India Institute of Medical Sciences, State Virus Research and Diagnostic Laboratory (VRDL)
Clade & Lineage
Clade
1III_A
Alignment states and QC metrics
Completeness
97.87%
Length
10506
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
492
Total unknown nucs
0
Sample details
Collection country
India
Collection date
2024-09-13
Isolate name
AIIMSR-DEN-66/2024
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
PV554923.1
NCBI release date
2025-04-29
NCBI update date
2025-04-29
Nucleotide mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
T
171
G
T
208
C
C
214
T
T
230
A
T
244
C
T
274
C
G
302
A
G
349
A
A
355
G
A
363
G
T
368
C
G
388
A
T
397
C
T
442
C
C
443
T
C
451
A
G
466
A
G
480
C
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
C
C:
V
26
G
C:
L
46
M
C:
G
70
S
C:
N
90
S
E
E:
F
96
V
E:
I
114
L
E:
T
161
I
E:
K
203
E
E:
I
293
T
E:
M
297
V
E:
F
337
I
E:
S
339
T
E:
A
369
T
E:
V
380
I
E:
I
439
V
E:
V
491
A
NS1
NS1:
V
178
M
NS1:
K
227
R
NS1:
D
278
N
NS1:
T
307
I
NS1:
K
324
R
NS1:
K
347
R
NS2A
NS2A:
R
82
K
NS2B
NS2B:
K
55
R
NS3
NS3:
R
185
K
NS3:
V
221
I
NS3:
V
452
A
NS4A
NS4A:
Q
19
L
NS4A:
R
76
K
NS4A:
I
89
M
NS4A:
A
93
V
NS4B
NS4B:
H
23
Y
NS4B:
A
27
T
NS4B:
K
212
R
NS5
NS5:
I
34
M
NS5:
L
123
I
NS5:
K
248
R
NS5:
V
270
I
NS5:
R
378
N
NS5:
I
669
T
prM
prM:
S
15
T
prM:
V
31
I
prM:
T
59
A
prM:
E
72
D
Deletions
None
Insertions
None
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